miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
404 3' -56.1 AC_000011.1 + 16267 0.66 0.566319
Target:  5'- uUCgccCCCCGgcGGCGCguGCAgugGCGCGGgCg -3'
miRNA:   3'- -AGaa-GGGGUa-CCGCG--UGU---UGUGCCgG- -5'
404 3' -56.1 AC_000011.1 + 17480 0.68 0.449111
Target:  5'- uUCgUCCC--UGGCucCGCGACACGGCa -3'
miRNA:   3'- -AGaAGGGguACCGc-GUGUUGUGCCGg -5'
404 3' -56.1 AC_000011.1 + 28393 0.67 0.479872
Target:  5'- gUCUUCUCCAUcGCuuACAgccuguGCACGGCg -3'
miRNA:   3'- -AGAAGGGGUAcCGcgUGU------UGUGCCGg -5'
404 3' -56.1 AC_000011.1 + 27100 0.67 0.500941
Target:  5'- ---gUCCCAUGGUgGCGCAGCugaccuagcuCGGCUu -3'
miRNA:   3'- agaaGGGGUACCG-CGUGUUGu---------GCCGG- -5'
404 3' -56.1 AC_000011.1 + 16927 0.67 0.500941
Target:  5'- aUCaUCCCCAcgccgGGCuacCGCGGCACGcGCUu -3'
miRNA:   3'- -AGaAGGGGUa----CCGc--GUGUUGUGC-CGG- -5'
404 3' -56.1 AC_000011.1 + 22894 0.67 0.511627
Target:  5'- uUCUUCaCCAUcaucuuaGCGCuaGCAGcCGCGGCCa -3'
miRNA:   3'- -AGAAGgGGUAc------CGCG--UGUU-GUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 8783 0.66 0.544218
Target:  5'- --gUCUCCGcggccGGCGCGCucCACGGUg -3'
miRNA:   3'- agaAGGGGUa----CCGCGUGuuGUGCCGg -5'
404 3' -56.1 AC_000011.1 + 4152 0.66 0.544218
Target:  5'- --aUCaCCCAgucauagcaggGGCGCAgGGCAUGGUg -3'
miRNA:   3'- agaAG-GGGUa----------CCGCGUgUUGUGCCGg -5'
404 3' -56.1 AC_000011.1 + 6185 0.66 0.566319
Target:  5'- uUUUUCCUUGUcGGCGCGCuccuugGCGGCg -3'
miRNA:   3'- -AGAAGGGGUA-CCGCGUGuug---UGCCGg -5'
404 3' -56.1 AC_000011.1 + 22168 0.68 0.439101
Target:  5'- gUCUgccUUCCCAUGGUGgGCAcGCACccgGGCUu -3'
miRNA:   3'- -AGA---AGGGGUACCGCgUGU-UGUG---CCGG- -5'
404 3' -56.1 AC_000011.1 + 7107 0.68 0.429219
Target:  5'- cCUUCUCCAcggggagGGCGUAgGccuGgGCGGCCu -3'
miRNA:   3'- aGAAGGGGUa------CCGCGUgU---UgUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 20870 0.68 0.419471
Target:  5'- aCUUCauguCCAUgGGCGCGCucaccGACcuCGGCCa -3'
miRNA:   3'- aGAAGg---GGUA-CCGCGUG-----UUGu-GCCGG- -5'
404 3' -56.1 AC_000011.1 + 20230 0.76 0.131565
Target:  5'- aUCUccaUCCCCu---CGCGCAACugGGCCg -3'
miRNA:   3'- -AGA---AGGGGuaccGCGUGUUGugCCGG- -5'
404 3' -56.1 AC_000011.1 + 16866 0.75 0.16041
Target:  5'- ---aCCCC--GGCGCaaguACGGCGCGGCCa -3'
miRNA:   3'- agaaGGGGuaCCGCG----UGUUGUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 11220 0.72 0.229327
Target:  5'- aUCagCCCCGcGcGCGCGCAcguggcCGCGGCCa -3'
miRNA:   3'- -AGaaGGGGUaC-CGCGUGUu-----GUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 15808 0.72 0.248433
Target:  5'- ---cCCCCGccauGCGCGCGGCGCGaGCCu -3'
miRNA:   3'- agaaGGGGUac--CGCGUGUUGUGC-CGG- -5'
404 3' -56.1 AC_000011.1 + 18314 0.71 0.275931
Target:  5'- gCUgCCCCAgugGGCGUACAugcACAUcGCCg -3'
miRNA:   3'- aGAaGGGGUa--CCGCGUGU---UGUGcCGG- -5'
404 3' -56.1 AC_000011.1 + 24369 0.7 0.324895
Target:  5'- --gUCCCCAgaguuuggaagagcGGCGCAaacuCAugAUGGCCg -3'
miRNA:   3'- agaAGGGGUa-------------CCGCGU----GUugUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 21204 0.69 0.372809
Target:  5'- gCUUCCCgggauuCAUGGCcccGCACAAgcUGGCCu -3'
miRNA:   3'- aGAAGGG------GUACCG---CGUGUUguGCCGG- -5'
404 3' -56.1 AC_000011.1 + 13603 0.69 0.372809
Target:  5'- --aUCCCCG-GGCGuCGCAGggggcCACGaGCCg -3'
miRNA:   3'- agaAGGGGUaCCGC-GUGUU-----GUGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.