miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
404 3' -56.1 AC_000011.1 + 6301 0.77 0.12073
Target:  5'- gUCUUCCCCgaauggaagugcGUGGCGCGCGAgUACGuGCa -3'
miRNA:   3'- -AGAAGGGG------------UACCGCGUGUU-GUGC-CGg -5'
404 3' -56.1 AC_000011.1 + 7158 0.66 0.522406
Target:  5'- --cUCCCCGUGGagaagggcugcUGCGCcuACAaGGCCg -3'
miRNA:   3'- agaAGGGGUACC-----------GCGUGu-UGUgCCGG- -5'
404 3' -56.1 AC_000011.1 + 22084 0.66 0.548617
Target:  5'- ---aCCCCGUGuaccgcaacucccgcGCGCAgAACGCGGgucCCa -3'
miRNA:   3'- agaaGGGGUAC---------------CGCGUgUUGUGCC---GG- -5'
404 3' -56.1 AC_000011.1 + 16623 0.66 0.555236
Target:  5'- gCUUgaaCCCccGGCGCGgCGcCGCGGUCg -3'
miRNA:   3'- aGAAg--GGGuaCCGCGU-GUuGUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 8606 0.71 0.298114
Target:  5'- gUCUUCUCCG-GGCGCAguacCAgaaccuaccgcGCGCGGCg -3'
miRNA:   3'- -AGAAGGGGUaCCGCGU----GU-----------UGUGCCGg -5'
404 3' -56.1 AC_000011.1 + 24669 0.7 0.305033
Target:  5'- --cUCCCCgcgcaggGUGGUGUGCAGCACGuucuGCCc -3'
miRNA:   3'- agaAGGGG-------UACCGCGUGUUGUGC----CGG- -5'
404 3' -56.1 AC_000011.1 + 34285 0.69 0.355158
Target:  5'- cUCUUCgCUgCAUGGCGgGCGGgGCGGUg -3'
miRNA:   3'- -AGAAG-GG-GUACCGCgUGUUgUGCCGg -5'
404 3' -56.1 AC_000011.1 + 7587 0.69 0.363909
Target:  5'- ---cCCCCAUcucccgacugGGCGCucgaGCAGCACGGgCu -3'
miRNA:   3'- agaaGGGGUA----------CCGCG----UGUUGUGCCgG- -5'
404 3' -56.1 AC_000011.1 + 13112 0.69 0.391047
Target:  5'- gCUgggCUCCAUGuuGCGCGCGgucaugucgaGCGCGGCg -3'
miRNA:   3'- aGAa--GGGGUAC--CGCGUGU----------UGUGCCGg -5'
404 3' -56.1 AC_000011.1 + 13414 0.67 0.511627
Target:  5'- ---aCCgCCGcGGCaGCACccuCGCGGCCg -3'
miRNA:   3'- agaaGG-GGUaCCG-CGUGuu-GUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 25447 0.67 0.459246
Target:  5'- aUUUCUggAUGGCuuGCAAUugGGCCa -3'
miRNA:   3'- aGAAGGggUACCGcgUGUUGugCCGG- -5'
404 3' -56.1 AC_000011.1 + 15685 0.69 0.391047
Target:  5'- gUCgUCgaCgGUGGUGCGCGaccgcACGCGGCCc -3'
miRNA:   3'- -AGaAGg-GgUACCGCGUGU-----UGUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 18136 0.74 0.189549
Target:  5'- ---gCCCCcgGGuCGCGCGcgggcCACGGCCa -3'
miRNA:   3'- agaaGGGGuaCC-GCGUGUu----GUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 21482 0.67 0.479872
Target:  5'- aCUUUUCCAgGGUGaCGCAGCGguccucggUGGCCa -3'
miRNA:   3'- aGAAGGGGUaCCGC-GUGUUGU--------GCCGG- -5'
404 3' -56.1 AC_000011.1 + 16867 0.72 0.235554
Target:  5'- gUCUgcacCUCCAUGGUGCugGuGCugGGCUu -3'
miRNA:   3'- -AGAa---GGGGUACCGCGugU-UGugCCGG- -5'
404 3' -56.1 AC_000011.1 + 3879 0.69 0.390121
Target:  5'- --cUCgCCCA-GGCGCugGgucaaggccucgaGCugGGCCa -3'
miRNA:   3'- agaAG-GGGUaCCGCGugU-------------UGugCCGG- -5'
404 3' -56.1 AC_000011.1 + 19818 0.67 0.500941
Target:  5'- --gUCCaCCAgcgagGGCGcCACcACcCGGCCg -3'
miRNA:   3'- agaAGG-GGUa----CCGC-GUGuUGuGCCGG- -5'
404 3' -56.1 AC_000011.1 + 9365 0.66 0.533273
Target:  5'- gUCUg-CCCGUGcGcCGCcgGCGACGCaGGCCc -3'
miRNA:   3'- -AGAagGGGUAC-C-GCG--UGUUGUG-CCGG- -5'
404 3' -56.1 AC_000011.1 + 9920 0.71 0.283175
Target:  5'- gUCcagCCCCAgcgcGGCuucgggcucacGCGCAuGCACGGCCg -3'
miRNA:   3'- -AGaa-GGGGUa---CCG-----------CGUGU-UGUGCCGG- -5'
404 3' -56.1 AC_000011.1 + 7907 0.7 0.338104
Target:  5'- uUCUUCCCCAUcGGCuCGCAuccucGCACcgaaaGGCUc -3'
miRNA:   3'- -AGAAGGGGUA-CCGcGUGU-----UGUG-----CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.