miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4042 5' -55.4 NC_001650.1 + 70491 0.66 0.947304
Target:  5'- -cGCCCuggagAGGGGGCUgGUG-GACaCCg -3'
miRNA:   3'- caCGGGua---UUUCCCGA-CACgCUGcGG- -5'
4042 5' -55.4 NC_001650.1 + 121092 0.66 0.947304
Target:  5'- -cGCCCGUccuGGGGUUccGgGACGCg -3'
miRNA:   3'- caCGGGUAuu-UCCCGAcaCgCUGCGg -5'
4042 5' -55.4 NC_001650.1 + 62815 0.66 0.947304
Target:  5'- gGUGCUU---GAGGcGCgagGCGGCGCCc -3'
miRNA:   3'- -CACGGGuauUUCC-CGacaCGCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 49443 0.66 0.947304
Target:  5'- -cGUCCGUGAggucugccucuGGGGCaucagGgGGCGCCg -3'
miRNA:   3'- caCGGGUAUU-----------UCCCGaca--CgCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 50013 0.66 0.947304
Target:  5'- cUGCCCGcgGGGGaGGC-GUGUGugGUg -3'
miRNA:   3'- cACGGGUa-UUUC-CCGaCACGCugCGg -5'
4042 5' -55.4 NC_001650.1 + 59748 0.66 0.94288
Target:  5'- -gGCCCGUGgcccccGGGGGCga---GGCGCCc -3'
miRNA:   3'- caCGGGUAU------UUCCCGacacgCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 52132 0.66 0.94288
Target:  5'- cUGCUUAUAuGGGGuCUGcuuaGUGACGCUu -3'
miRNA:   3'- cACGGGUAUuUCCC-GACa---CGCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 131382 0.66 0.94288
Target:  5'- -cGCCCGcucccAGGGCgg-GCagGGCGCCg -3'
miRNA:   3'- caCGGGUauu--UCCCGacaCG--CUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 131439 0.66 0.94288
Target:  5'- -gGCCCAcgUGcAGGGCguccUG-GACGCCu -3'
miRNA:   3'- caCGGGU--AUuUCCCGac--ACgCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 119992 0.66 0.94288
Target:  5'- --cCCCGUAcAGGGGCUGccuguaggGgGGCGCUa -3'
miRNA:   3'- cacGGGUAU-UUCCCGACa-------CgCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 144096 0.66 0.94288
Target:  5'- -cGCCCAU------CUGUgGCGACGCCg -3'
miRNA:   3'- caCGGGUAuuucccGACA-CGCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 82002 0.66 0.941967
Target:  5'- cGUGUCCcucucgguGGGcCUGUGCGAgagucUGCCc -3'
miRNA:   3'- -CACGGGuauuu---CCC-GACACGCU-----GCGG- -5'
4042 5' -55.4 NC_001650.1 + 127916 0.66 0.938221
Target:  5'- cGUGCg---GAAcGGGCUGggGCGcGCGCCa -3'
miRNA:   3'- -CACGgguaUUU-CCCGACa-CGC-UGCGG- -5'
4042 5' -55.4 NC_001650.1 + 31015 0.66 0.938221
Target:  5'- -gGCCUGgcuGGGGCgg-GgGGCGCCc -3'
miRNA:   3'- caCGGGUauuUCCCGacaCgCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 23137 0.66 0.933325
Target:  5'- cUGCCCAUAGAcaGGUgGUGCGGgacgGCCu -3'
miRNA:   3'- cACGGGUAUUUc-CCGaCACGCUg---CGG- -5'
4042 5' -55.4 NC_001650.1 + 51430 0.66 0.933325
Target:  5'- cUGCCCGcgcgcUAcAGGGagaacCUGaGCGugGCCg -3'
miRNA:   3'- cACGGGU-----AUuUCCC-----GACaCGCugCGG- -5'
4042 5' -55.4 NC_001650.1 + 81188 0.66 0.928191
Target:  5'- -cGUCCAU--GGGGuCUG-GCG-CGCCc -3'
miRNA:   3'- caCGGGUAuuUCCC-GACaCGCuGCGG- -5'
4042 5' -55.4 NC_001650.1 + 26634 0.66 0.922819
Target:  5'- uUGCCCA---GGGGCgGcGCGGUGCUg -3'
miRNA:   3'- cACGGGUauuUCCCGaCaCGCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 61247 0.66 0.922819
Target:  5'- -gGCCaCGUGGAGGGCg--GUGGCcugcuccaGCCg -3'
miRNA:   3'- caCGG-GUAUUUCCCGacaCGCUG--------CGG- -5'
4042 5' -55.4 NC_001650.1 + 47583 0.66 0.922819
Target:  5'- cUGCCCGcgGAgccucAGGGCgcccCGACGCCc -3'
miRNA:   3'- cACGGGUa-UU-----UCCCGacacGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.