miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4042 5' -55.4 NC_001650.1 + 121097 0.73 0.600152
Target:  5'- uUGCCCAgguUGAAGGGCU-UGC-ACGCUg -3'
miRNA:   3'- cACGGGU---AUUUCCCGAcACGcUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 180538 0.68 0.878641
Target:  5'- uGUGCCCcuuAAGGGCcaaUGgcagagcGgGACGCCc -3'
miRNA:   3'- -CACGGGuauUUCCCG---ACa------CgCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 27366 0.68 0.880764
Target:  5'- aUGCCCccgagagGUGGuucgauuccaauggcGGGGCUGcUGCcaGACGCCc -3'
miRNA:   3'- cACGGG-------UAUU---------------UCCCGAC-ACG--CUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 50013 0.66 0.947304
Target:  5'- cUGCCCGcgGGGGaGGC-GUGUGugGUg -3'
miRNA:   3'- cACGGGUa-UUUC-CCGaCACGCugCGg -5'
4042 5' -55.4 NC_001650.1 + 161736 0.69 0.806514
Target:  5'- -gGCCCAUGccGGGCg--GCGccGCGCUc -3'
miRNA:   3'- caCGGGUAUuuCCCGacaCGC--UGCGG- -5'
4042 5' -55.4 NC_001650.1 + 149047 0.69 0.81526
Target:  5'- gGUGCUgGUGuGGGGCaccacccccGCGGCGCCu -3'
miRNA:   3'- -CACGGgUAUuUCCCGaca------CGCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 27598 0.69 0.823841
Target:  5'- -gGCCCAgcuggAGAGGGCg--GUGAUgGCCu -3'
miRNA:   3'- caCGGGUa----UUUCCCGacaCGCUG-CGG- -5'
4042 5' -55.4 NC_001650.1 + 137849 0.69 0.823841
Target:  5'- gGUGCCCcgc---GGCcGaUGCGGCGCCg -3'
miRNA:   3'- -CACGGGuauuucCCGaC-ACGCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 25420 0.69 0.840474
Target:  5'- cUGaCCCuccucAGGGGCagGaGCGACGCCg -3'
miRNA:   3'- cAC-GGGuau--UUCCCGa-CaCGCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 13831 0.68 0.878641
Target:  5'- uGUGCCCcuuAAGGGCcaaUGgcagagcGgGACGCCc -3'
miRNA:   3'- -CACGGGuauUUCCCG---ACa------CgCUGCGG- -5'
4042 5' -55.4 NC_001650.1 + 111212 0.68 0.848512
Target:  5'- gGUGCUCAgggaGAGGGGCgugGgGGCGCa -3'
miRNA:   3'- -CACGGGUa---UUUCCCGacaCgCUGCGg -5'
4042 5' -55.4 NC_001650.1 + 28635 0.69 0.832248
Target:  5'- -gGCCUccAGGGGGCUgGUGCaggggcugGugGCCg -3'
miRNA:   3'- caCGGGuaUUUCCCGA-CACG--------CugCGG- -5'
4042 5' -55.4 NC_001650.1 + 134667 0.7 0.76059
Target:  5'- cGUGCaCCAUcucGGGCUGcGUGuCGCCc -3'
miRNA:   3'- -CACG-GGUAuuuCCCGACaCGCuGCGG- -5'
4042 5' -55.4 NC_001650.1 + 93288 0.68 0.863993
Target:  5'- gGUGCUgGUuagggacGGGGcGCUGUGCGugaGCCa -3'
miRNA:   3'- -CACGGgUAu------UUCC-CGACACGCug-CGG- -5'
4042 5' -55.4 NC_001650.1 + 156617 0.7 0.779363
Target:  5'- cUGCCCG-AGAGGGCcGagGCGggcACGCCc -3'
miRNA:   3'- cACGGGUaUUUCCCGaCa-CGC---UGCGG- -5'
4042 5' -55.4 NC_001650.1 + 107443 0.69 0.827226
Target:  5'- cGUGgCCAUAGAGGGCaacagcagccaggacUcUGCgGugGCCa -3'
miRNA:   3'- -CACgGGUAUUUCCCG---------------AcACG-CugCGG- -5'
4042 5' -55.4 NC_001650.1 + 19323 0.68 0.863993
Target:  5'- -gGCCCGggggguGGGgUGgcgGCGGCGCg -3'
miRNA:   3'- caCGGGUauuu--CCCgACa--CGCUGCGg -5'
4042 5' -55.4 NC_001650.1 + 133347 0.68 0.878641
Target:  5'- -cGCUCGaagcGGGGC-GUGCGcuGCGCCa -3'
miRNA:   3'- caCGGGUauu-UCCCGaCACGC--UGCGG- -5'
4042 5' -55.4 NC_001650.1 + 62715 0.7 0.788556
Target:  5'- -aGCCgGUGGgagaugcugguGGGGCUGcaGCGGCGCa -3'
miRNA:   3'- caCGGgUAUU-----------UCCCGACa-CGCUGCGg -5'
4042 5' -55.4 NC_001650.1 + 161781 0.69 0.823841
Target:  5'- -aGCCCA-GGAGGGUgg-GCG-CGCCc -3'
miRNA:   3'- caCGGGUaUUUCCCGacaCGCuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.