miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
405 3' -59.7 AC_000011.1 + 15448 0.66 0.416595
Target:  5'- --gGGCAG-GugCGGCgUCUGGCGUCa -3'
miRNA:   3'- gggCCGUUgCugGCCGaGGACUGCGG- -5'
405 3' -59.7 AC_000011.1 + 15569 0.67 0.354972
Target:  5'- cCCCGuGCGcgugcGCGGgcacuuCCGcGCUCCcuggGGCGCCc -3'
miRNA:   3'- -GGGC-CGU-----UGCU------GGC-CGAGGa---CUGCGG- -5'
405 3' -59.7 AC_000011.1 + 15689 0.66 0.425918
Target:  5'- cCCCGccGCcGCGcCCGuCUCCaccgugGACGCCg -3'
miRNA:   3'- -GGGC--CGuUGCuGGCcGAGGa-----CUGCGG- -5'
405 3' -59.7 AC_000011.1 + 15772 0.67 0.354139
Target:  5'- gCCGGCGGCGGcgcaucgcCCGGCggcaCCgGAgcaccccCGCCa -3'
miRNA:   3'- gGGCCGUUGCU--------GGCCGa---GGaCU-------GCGG- -5'
405 3' -59.7 AC_000011.1 + 15830 0.81 0.038294
Target:  5'- gCCgGGCGAUGcgccgccGCCGGCUCUUGGCGCg -3'
miRNA:   3'- -GGgCCGUUGC-------UGGCCGAGGACUGCGg -5'
405 3' -59.7 AC_000011.1 + 15879 0.69 0.285626
Target:  5'- -gCGGCcaGACG-CgCGGCUUCaGGCGCCa -3'
miRNA:   3'- ggGCCG--UUGCuG-GCCGAGGaCUGCGG- -5'
405 3' -59.7 AC_000011.1 + 15960 0.67 0.371909
Target:  5'- cUCCGGgucCuGCCGGCg-CUGGCGCCu -3'
miRNA:   3'- -GGGCCguuGcUGGCCGagGACUGCGG- -5'
405 3' -59.7 AC_000011.1 + 15997 0.7 0.215928
Target:  5'- gCUGGCGAUGGCCGcuGCcgCCgccGugGCCg -3'
miRNA:   3'- gGGCCGUUGCUGGC--CGa-GGa--CugCGG- -5'
405 3' -59.7 AC_000011.1 + 16347 0.66 0.398327
Target:  5'- gCCCGGCgAGCGcuCCGGCaccgcuUCCaaGCGCUc -3'
miRNA:   3'- -GGGCCG-UUGCu-GGCCG------AGGacUGCGG- -5'
405 3' -59.7 AC_000011.1 + 16867 0.74 0.113039
Target:  5'- cCCCGGCGcaaguacggcGCGGCCaGcCUgCUGAUGCCc -3'
miRNA:   3'- -GGGCCGU----------UGCUGGcC-GAgGACUGCGG- -5'
405 3' -59.7 AC_000011.1 + 17253 0.68 0.328233
Target:  5'- aCCGGCGGCGGCgcgccaucagcaagCGGUuggggggaggcuUCCUGcccGCGCUg -3'
miRNA:   3'- gGGCCGUUGCUG--------------GCCG------------AGGAC---UGCGG- -5'
405 3' -59.7 AC_000011.1 + 17785 0.79 0.054241
Target:  5'- aCCCGGUGcCGcccGCCGGCUCCguggaGAUGCCg -3'
miRNA:   3'- -GGGCCGUuGC---UGGCCGAGGa----CUGCGG- -5'
405 3' -59.7 AC_000011.1 + 17839 0.68 0.307485
Target:  5'- gCCGGCgGGCGgcACCGGgUCCaGGCGgCu -3'
miRNA:   3'- gGGCCG-UUGC--UGGCCgAGGaCUGCgG- -5'
405 3' -59.7 AC_000011.1 + 20005 0.66 0.407397
Target:  5'- aCCCgGGCAGgaGCaggaGGCUCUUGAUGgCg -3'
miRNA:   3'- -GGG-CCGUUgcUGg---CCGAGGACUGCgG- -5'
405 3' -59.7 AC_000011.1 + 20025 0.69 0.271745
Target:  5'- cCUCGGCAACGACCuGCgcaCgGACgggGCCu -3'
miRNA:   3'- -GGGCCGUUGCUGGcCGag-GaCUG---CGG- -5'
405 3' -59.7 AC_000011.1 + 20430 1.12 0.000168
Target:  5'- gCCCGGCAACGACCGGCUCCUGACGCCc -3'
miRNA:   3'- -GGGCCGUUGCUGGCCGAGGACUGCGG- -5'
405 3' -59.7 AC_000011.1 + 20803 0.7 0.215928
Target:  5'- gCgGGguAgGGCUGGC-CCUGGCGCa -3'
miRNA:   3'- gGgCCguUgCUGGCCGaGGACUGCGg -5'
405 3' -59.7 AC_000011.1 + 21205 0.66 0.397427
Target:  5'- gCCCaGGUcgcggauGAUGGCCcugaGCUCCUGcuCGCCg -3'
miRNA:   3'- -GGG-CCG-------UUGCUGGc---CGAGGACu-GCGG- -5'
405 3' -59.7 AC_000011.1 + 21269 0.66 0.425918
Target:  5'- aCCGGgGGCGAgcaCUGGCUggCCUu-CGCCu -3'
miRNA:   3'- gGGCCgUUGCU---GGCCGA--GGAcuGCGG- -5'
405 3' -59.7 AC_000011.1 + 21311 0.69 0.269035
Target:  5'- cCCCGGUcucGCGGCCGGCcguguugacgaUGGCGCa -3'
miRNA:   3'- -GGGCCGu--UGCUGGCCGagg--------ACUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.