miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
405 3' -59.7 AC_000011.1 + 7785 0.79 0.052709
Target:  5'- cUCCGGgGACGACCGGCUCgUcGAgcuCGCCc -3'
miRNA:   3'- -GGGCCgUUGCUGGCCGAGgA-CU---GCGG- -5'
405 3' -59.7 AC_000011.1 + 8570 0.66 0.42498
Target:  5'- aCUGGCGugaGCGACgacgcgaCGGUUgacguccuggaUCUGACGCCu -3'
miRNA:   3'- gGGCCGU---UGCUG-------GCCGA-----------GGACUGCGG- -5'
405 3' -59.7 AC_000011.1 + 9035 0.67 0.354972
Target:  5'- aUCCaGCGGCGGagCGGCaucUCgCUGACGUCg -3'
miRNA:   3'- -GGGcCGUUGCUg-GCCG---AG-GACUGCGG- -5'
405 3' -59.7 AC_000011.1 + 10145 0.67 0.354139
Target:  5'- -gCGGCGGCGGCUGGCgguagagcggccaUCgCUcgguggcgggGGCGCCg -3'
miRNA:   3'- ggGCCGUUGCUGGCCG-------------AG-GA----------CUGCGG- -5'
405 3' -59.7 AC_000011.1 + 10217 0.66 0.398327
Target:  5'- aCCGaGCGAUGGCC-GCUCUac-CGCCa -3'
miRNA:   3'- gGGC-CGUUGCUGGcCGAGGacuGCGG- -5'
405 3' -59.7 AC_000011.1 + 11057 0.66 0.398327
Target:  5'- cUCCGGCGACGACgcccccaGGCgcgCCaGccccuCGCCc -3'
miRNA:   3'- -GGGCCGUUGCUGg------CCGa--GGaCu----GCGG- -5'
405 3' -59.7 AC_000011.1 + 12111 0.73 0.137073
Target:  5'- gCCGG--ACGGCUGGCUCUgcaGCGCCg -3'
miRNA:   3'- gGGCCguUGCUGGCCGAGGac-UGCGG- -5'
405 3' -59.7 AC_000011.1 + 12170 0.66 0.425918
Target:  5'- aCCGGCucuCGGCCa--UCCUGGagGCCg -3'
miRNA:   3'- gGGCCGuu-GCUGGccgAGGACUg-CGG- -5'
405 3' -59.7 AC_000011.1 + 12662 0.73 0.151599
Target:  5'- cCCCGGuCGGgGACCGcGCgacggugucgagccUgCUGACGCCg -3'
miRNA:   3'- -GGGCC-GUUgCUGGC-CG--------------AgGACUGCGG- -5'
405 3' -59.7 AC_000011.1 + 12715 0.7 0.227418
Target:  5'- gCgCGGUcccCGACCGGggCCUGcACGCCc -3'
miRNA:   3'- -GgGCCGuu-GCUGGCCgaGGAC-UGCGG- -5'
405 3' -59.7 AC_000011.1 + 12994 0.67 0.354972
Target:  5'- --aGaGCGugGGCCuGUUCCUGAUGCa -3'
miRNA:   3'- gggC-CGUugCUGGcCGAGGACUGCGg -5'
405 3' -59.7 AC_000011.1 + 13223 0.69 0.278617
Target:  5'- gCCCGacccCAAUGACgGGUUCCUGugGg- -3'
miRNA:   3'- -GGGCc---GUUGCUGgCCGAGGACugCgg -5'
405 3' -59.7 AC_000011.1 + 13319 0.71 0.199628
Target:  5'- --aGGCAGCGACCGacGCccgUCCUcGGCGCUg -3'
miRNA:   3'- gggCCGUUGCUGGC--CG---AGGA-CUGCGG- -5'
405 3' -59.7 AC_000011.1 + 13411 0.66 0.416595
Target:  5'- gCCgCGGCAgcacccucGCGGCCGGacagcgCCgaggacgGGCGUCg -3'
miRNA:   3'- -GG-GCCGU--------UGCUGGCCga----GGa------CUGCGG- -5'
405 3' -59.7 AC_000011.1 + 13647 0.66 0.425918
Target:  5'- gCCCGGgGAuCGuccCUGuGCUCCUG-CGCa -3'
miRNA:   3'- -GGGCCgUU-GCu--GGC-CGAGGACuGCGg -5'
405 3' -59.7 AC_000011.1 + 13684 0.69 0.265011
Target:  5'- aCgGGCGGCGcugccCCGGCUCgUGGCcCCc -3'
miRNA:   3'- gGgCCGUUGCu----GGCCGAGgACUGcGG- -5'
405 3' -59.7 AC_000011.1 + 14721 0.66 0.397427
Target:  5'- --gGGCAACauccCCGcGCUCCUggaugucGACGCCu -3'
miRNA:   3'- gggCCGUUGcu--GGC-CGAGGA-------CUGCGG- -5'
405 3' -59.7 AC_000011.1 + 14999 0.67 0.371909
Target:  5'- cCCCGaGaagGGCGugC-GCUCCUGgACGCUg -3'
miRNA:   3'- -GGGC-Cg--UUGCugGcCGAGGAC-UGCGG- -5'
405 3' -59.7 AC_000011.1 + 15122 0.7 0.227418
Target:  5'- gUCgGGCAGCGACCaguagacuuGCUCC--ACGCCg -3'
miRNA:   3'- -GGgCCGUUGCUGGc--------CGAGGacUGCGG- -5'
405 3' -59.7 AC_000011.1 + 15136 0.73 0.152836
Target:  5'- aCCCGGUggUGggcGCCGaGCUCCUGccCGUCu -3'
miRNA:   3'- -GGGCCGuuGC---UGGC-CGAGGACu-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.