Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
405 | 3' | -59.7 | AC_000011.1 | + | 14721 | 0.66 | 0.397427 |
Target: 5'- --gGGCAACauccCCGcGCUCCUggaugucGACGCCu -3' miRNA: 3'- gggCCGUUGcu--GGC-CGAGGA-------CUGCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 25465 | 0.67 | 0.34671 |
Target: 5'- aCCGGUGAgGAgcucaaccCCGGCUUCccccagGAUGCCc -3' miRNA: 3'- gGGCCGUUgCU--------GGCCGAGGa-----CUGCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 10145 | 0.67 | 0.354139 |
Target: 5'- -gCGGCGGCGGCUGGCgguagagcggccaUCgCUcgguggcgggGGCGCCg -3' miRNA: 3'- ggGCCGUUGCUGGCCG-------------AG-GA----------CUGCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 15772 | 0.67 | 0.354139 |
Target: 5'- gCCGGCGGCGGcgcaucgcCCGGCggcaCCgGAgcaccccCGCCa -3' miRNA: 3'- gGGCCGUUGCU--------GGCCGa---GGaCU-------GCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 12994 | 0.67 | 0.354972 |
Target: 5'- --aGaGCGugGGCCuGUUCCUGAUGCa -3' miRNA: 3'- gggC-CGUugCUGGcCGAGGACUGCGg -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 9035 | 0.67 | 0.354972 |
Target: 5'- aUCCaGCGGCGGagCGGCaucUCgCUGACGUCg -3' miRNA: 3'- -GGGcCGUUGCUg-GCCG---AG-GACUGCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 15569 | 0.67 | 0.354972 |
Target: 5'- cCCCGuGCGcgugcGCGGgcacuuCCGcGCUCCcuggGGCGCCc -3' miRNA: 3'- -GGGC-CGU-----UGCU------GGC-CGAGGa---CUGCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 14999 | 0.67 | 0.371909 |
Target: 5'- cCCCGaGaagGGCGugC-GCUCCUGgACGCUg -3' miRNA: 3'- -GGGC-Cg--UUGCugGcCGAGGAC-UGCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 28269 | 0.67 | 0.371909 |
Target: 5'- cCCCGGUGcUGA-CGGCUCCccGCGCa -3' miRNA: 3'- -GGGCCGUuGCUgGCCGAGGacUGCGg -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 17253 | 0.68 | 0.328233 |
Target: 5'- aCCGGCGGCGGCgcgccaucagcaagCGGUuggggggaggcuUCCUGcccGCGCUg -3' miRNA: 3'- gGGCCGUUGCUG--------------GCCG------------AGGAC---UGCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 23231 | 0.68 | 0.30006 |
Target: 5'- --aGGCGgagGCGACgGGCUCUcGcCGCCg -3' miRNA: 3'- gggCCGU---UGCUGgCCGAGGaCuGCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 15879 | 0.69 | 0.285626 |
Target: 5'- -gCGGCcaGACG-CgCGGCUUCaGGCGCCa -3' miRNA: 3'- ggGCCG--UUGCuG-GCCGAGGaCUGCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 17785 | 0.79 | 0.054241 |
Target: 5'- aCCCGGUGcCGcccGCCGGCUCCguggaGAUGCCg -3' miRNA: 3'- -GGGCCGUuGC---UGGCCGAGGa----CUGCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 16867 | 0.74 | 0.113039 |
Target: 5'- cCCCGGCGcaaguacggcGCGGCCaGcCUgCUGAUGCCc -3' miRNA: 3'- -GGGCCGU----------UGCUGGcC-GAgGACUGCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 12662 | 0.73 | 0.151599 |
Target: 5'- cCCCGGuCGGgGACCGcGCgacggugucgagccUgCUGACGCCg -3' miRNA: 3'- -GGGCC-GUUgCUGGC-CG--------------AgGACUGCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 15136 | 0.73 | 0.152836 |
Target: 5'- aCCCGGUggUGggcGCCGaGCUCCUGccCGUCu -3' miRNA: 3'- -GGGCCGuuGC---UGGC-CGAGGACu-GCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 13319 | 0.71 | 0.199628 |
Target: 5'- --aGGCAGCGACCGacGCccgUCCUcGGCGCUg -3' miRNA: 3'- gggCCGUUGCUGGC--CG---AGGA-CUGCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 34686 | 0.7 | 0.245618 |
Target: 5'- gCCGGCGGCGGucUCGGCgCUUGgaACGCUc -3' miRNA: 3'- gGGCCGUUGCU--GGCCGaGGAC--UGCGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 20025 | 0.69 | 0.271745 |
Target: 5'- cCUCGGCAACGACCuGCgcaCgGACgggGCCu -3' miRNA: 3'- -GGGCCGUUGCUGGcCGag-GaCUG---CGG- -5' |
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405 | 3' | -59.7 | AC_000011.1 | + | 13223 | 0.69 | 0.278617 |
Target: 5'- gCCCGacccCAAUGACgGGUUCCUGugGg- -3' miRNA: 3'- -GGGCc---GUUGCUGgCCGAGGACugCgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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