miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
405 3' -59.7 AC_000011.1 + 15830 0.81 0.038294
Target:  5'- gCCgGGCGAUGcgccgccGCCGGCUCUUGGCGCg -3'
miRNA:   3'- -GGgCCGUUGC-------UGGCCGAGGACUGCGg -5'
405 3' -59.7 AC_000011.1 + 20005 0.66 0.407397
Target:  5'- aCCCgGGCAGgaGCaggaGGCUCUUGAUGgCg -3'
miRNA:   3'- -GGG-CCGUUgcUGg---CCGAGGACUGCgG- -5'
405 3' -59.7 AC_000011.1 + 15448 0.66 0.416595
Target:  5'- --gGGCAG-GugCGGCgUCUGGCGUCa -3'
miRNA:   3'- gggCCGUUgCugGCCGaGGACUGCGG- -5'
405 3' -59.7 AC_000011.1 + 13647 0.66 0.425918
Target:  5'- gCCCGGgGAuCGuccCUGuGCUCCUG-CGCa -3'
miRNA:   3'- -GGGCCgUU-GCu--GGC-CGAGGACuGCGg -5'
405 3' -59.7 AC_000011.1 + 20803 0.7 0.215928
Target:  5'- gCgGGguAgGGCUGGC-CCUGGCGCa -3'
miRNA:   3'- gGgCCguUgCUGGCCGaGGACUGCGg -5'
405 3' -59.7 AC_000011.1 + 15997 0.7 0.215928
Target:  5'- gCUGGCGAUGGCCGcuGCcgCCgccGugGCCg -3'
miRNA:   3'- gGGCCGUUGCUGGC--CGa-GGa--CugCGG- -5'
405 3' -59.7 AC_000011.1 + 12715 0.7 0.227418
Target:  5'- gCgCGGUcccCGACCGGggCCUGcACGCCc -3'
miRNA:   3'- -GgGCCGuu-GCUGGCCgaGGAC-UGCGG- -5'
405 3' -59.7 AC_000011.1 + 13684 0.69 0.265011
Target:  5'- aCgGGCGGCGcugccCCGGCUCgUGGCcCCc -3'
miRNA:   3'- gGgCCGUUGCu----GGCCGAGgACUGcGG- -5'
405 3' -59.7 AC_000011.1 + 17839 0.68 0.307485
Target:  5'- gCCGGCgGGCGgcACCGGgUCCaGGCGgCu -3'
miRNA:   3'- gGGCCG-UUGC--UGGCCgAGGaCUGCgG- -5'
405 3' -59.7 AC_000011.1 + 21205 0.66 0.397427
Target:  5'- gCCCaGGUcgcggauGAUGGCCcugaGCUCCUGcuCGCCg -3'
miRNA:   3'- -GGG-CCG-------UUGCUGGc---CGAGGACu-GCGG- -5'
405 3' -59.7 AC_000011.1 + 26166 0.68 0.307485
Target:  5'- uCCCGGguuuGCG-CCGGCUCgUu-CGCCg -3'
miRNA:   3'- -GGGCCgu--UGCuGGCCGAGgAcuGCGG- -5'
405 3' -59.7 AC_000011.1 + 7785 0.79 0.052709
Target:  5'- cUCCGGgGACGACCGGCUCgUcGAgcuCGCCc -3'
miRNA:   3'- -GGGCCgUUGCUGGCCGAGgA-CU---GCGG- -5'
405 3' -59.7 AC_000011.1 + 11057 0.66 0.398327
Target:  5'- cUCCGGCGACGACgcccccaGGCgcgCCaGccccuCGCCc -3'
miRNA:   3'- -GGGCCGUUGCUGg------CCGa--GGaCu----GCGG- -5'
405 3' -59.7 AC_000011.1 + 33864 0.74 0.129763
Target:  5'- -gCGGCAGCGACUGcuGCggggCCUGAUGCg -3'
miRNA:   3'- ggGCCGUUGCUGGC--CGa---GGACUGCGg -5'
405 3' -59.7 AC_000011.1 + 21311 0.69 0.269035
Target:  5'- cCCCGGUcucGCGGCCGGCcguguugacgaUGGCGCa -3'
miRNA:   3'- -GGGCCGu--UGCUGGCCGagg--------ACUGCGg -5'
405 3' -59.7 AC_000011.1 + 10217 0.66 0.398327
Target:  5'- aCCGaGCGAUGGCC-GCUCUac-CGCCa -3'
miRNA:   3'- gGGC-CGUUGCUGGcCGAGGacuGCGG- -5'
405 3' -59.7 AC_000011.1 + 13411 0.66 0.416595
Target:  5'- gCCgCGGCAgcacccucGCGGCCGGacagcgCCgaggacgGGCGUCg -3'
miRNA:   3'- -GG-GCCGU--------UGCUGGCCga----GGa------CUGCGG- -5'
405 3' -59.7 AC_000011.1 + 12111 0.73 0.137073
Target:  5'- gCCGG--ACGGCUGGCUCUgcaGCGCCg -3'
miRNA:   3'- gGGCCguUGCUGGCCGAGGac-UGCGG- -5'
405 3' -59.7 AC_000011.1 + 15122 0.7 0.227418
Target:  5'- gUCgGGCAGCGACCaguagacuuGCUCC--ACGCCg -3'
miRNA:   3'- -GGgCCGUUGCUGGc--------CGAGGacUGCGG- -5'
405 3' -59.7 AC_000011.1 + 15960 0.67 0.371909
Target:  5'- cUCCGGgucCuGCCGGCg-CUGGCGCCu -3'
miRNA:   3'- -GGGCCguuGcUGGCCGagGACUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.