miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
405 3' -59.7 AC_000011.1 + 20430 1.12 0.000168
Target:  5'- gCCCGGCAACGACCGGCUCCUGACGCCc -3'
miRNA:   3'- -GGGCCGUUGCUGGCCGAGGACUGCGG- -5'
405 3' -59.7 AC_000011.1 + 15830 0.81 0.038294
Target:  5'- gCCgGGCGAUGcgccgccGCCGGCUCUUGGCGCg -3'
miRNA:   3'- -GGgCCGUUGC-------UGGCCGAGGACUGCGg -5'
405 3' -59.7 AC_000011.1 + 7785 0.79 0.052709
Target:  5'- cUCCGGgGACGACCGGCUCgUcGAgcuCGCCc -3'
miRNA:   3'- -GGGCCgUUGCUGGCCGAGgA-CU---GCGG- -5'
405 3' -59.7 AC_000011.1 + 17785 0.79 0.054241
Target:  5'- aCCCGGUGcCGcccGCCGGCUCCguggaGAUGCCg -3'
miRNA:   3'- -GGGCCGUuGC---UGGCCGAGGa----CUGCGG- -5'
405 3' -59.7 AC_000011.1 + 16867 0.74 0.113039
Target:  5'- cCCCGGCGcaaguacggcGCGGCCaGcCUgCUGAUGCCc -3'
miRNA:   3'- -GGGCCGU----------UGCUGGcC-GAgGACUGCGG- -5'
405 3' -59.7 AC_000011.1 + 33864 0.74 0.129763
Target:  5'- -gCGGCAGCGACUGcuGCggggCCUGAUGCg -3'
miRNA:   3'- ggGCCGUUGCUGGC--CGa---GGACUGCGg -5'
405 3' -59.7 AC_000011.1 + 12111 0.73 0.137073
Target:  5'- gCCGG--ACGGCUGGCUCUgcaGCGCCg -3'
miRNA:   3'- gGGCCguUGCUGGCCGAGGac-UGCGG- -5'
405 3' -59.7 AC_000011.1 + 12662 0.73 0.151599
Target:  5'- cCCCGGuCGGgGACCGcGCgacggugucgagccUgCUGACGCCg -3'
miRNA:   3'- -GGGCC-GUUgCUGGC-CG--------------AgGACUGCGG- -5'
405 3' -59.7 AC_000011.1 + 15136 0.73 0.152836
Target:  5'- aCCCGGUggUGggcGCCGaGCUCCUGccCGUCu -3'
miRNA:   3'- -GGGCCGuuGC---UGGC-CGAGGACu-GCGG- -5'
405 3' -59.7 AC_000011.1 + 13319 0.71 0.199628
Target:  5'- --aGGCAGCGACCGacGCccgUCCUcGGCGCUg -3'
miRNA:   3'- gggCCGUUGCUGGC--CG---AGGA-CUGCGG- -5'
405 3' -59.7 AC_000011.1 + 20803 0.7 0.215928
Target:  5'- gCgGGguAgGGCUGGC-CCUGGCGCa -3'
miRNA:   3'- gGgCCguUgCUGGCCGaGGACUGCGg -5'
405 3' -59.7 AC_000011.1 + 15997 0.7 0.215928
Target:  5'- gCUGGCGAUGGCCGcuGCcgCCgccGugGCCg -3'
miRNA:   3'- gGGCCGUUGCUGGC--CGa-GGa--CugCGG- -5'
405 3' -59.7 AC_000011.1 + 15122 0.7 0.227418
Target:  5'- gUCgGGCAGCGACCaguagacuuGCUCC--ACGCCg -3'
miRNA:   3'- -GGgCCGUUGCUGGc--------CGAGGacUGCGG- -5'
405 3' -59.7 AC_000011.1 + 12715 0.7 0.227418
Target:  5'- gCgCGGUcccCGACCGGggCCUGcACGCCc -3'
miRNA:   3'- -GgGCCGuu-GCUGGCCgaGGAC-UGCGG- -5'
405 3' -59.7 AC_000011.1 + 34686 0.7 0.245618
Target:  5'- gCCGGCGGCGGucUCGGCgCUUGgaACGCUc -3'
miRNA:   3'- gGGCCGUUGCU--GGCCGaGGAC--UGCGG- -5'
405 3' -59.7 AC_000011.1 + 13684 0.69 0.265011
Target:  5'- aCgGGCGGCGcugccCCGGCUCgUGGCcCCc -3'
miRNA:   3'- gGgCCGUUGCu----GGCCGAGgACUGcGG- -5'
405 3' -59.7 AC_000011.1 + 21311 0.69 0.269035
Target:  5'- cCCCGGUcucGCGGCCGGCcguguugacgaUGGCGCa -3'
miRNA:   3'- -GGGCCGu--UGCUGGCCGagg--------ACUGCGg -5'
405 3' -59.7 AC_000011.1 + 20025 0.69 0.271745
Target:  5'- cCUCGGCAACGACCuGCgcaCgGACgggGCCu -3'
miRNA:   3'- -GGGCCGUUGCUGGcCGag-GaCUG---CGG- -5'
405 3' -59.7 AC_000011.1 + 13223 0.69 0.278617
Target:  5'- gCCCGacccCAAUGACgGGUUCCUGugGg- -3'
miRNA:   3'- -GGGCc---GUUGCUGgCCGAGGACugCgg -5'
405 3' -59.7 AC_000011.1 + 15879 0.69 0.285626
Target:  5'- -gCGGCcaGACG-CgCGGCUUCaGGCGCCa -3'
miRNA:   3'- ggGCCG--UUGCuG-GCCGAGGaCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.