Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
408 | 3' | -55.6 | AC_000011.1 | + | 5231 | 0.66 | 0.559959 |
Target: 5'- cGCCGGgcugGGCGCUugCgagggugcGCUUcAGGCUCa -3' miRNA: 3'- cCGGCCa---UUGCGGugG--------UGGA-UUCGAG- -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 8908 | 0.73 | 0.212457 |
Target: 5'- cGCCGGc-GCGCaugACCACCUGGGCg- -3' miRNA: 3'- cCGGCCauUGCGg--UGGUGGAUUCGag -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 9248 | 0.78 | 0.104529 |
Target: 5'- gGGCCuucgagcgcgaGGUGcGCGCCACCAUCgccGAGCUCa -3' miRNA: 3'- -CCGG-----------CCAU-UGCGGUGGUGGa--UUCGAG- -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 11838 | 0.7 | 0.323862 |
Target: 5'- uGGUCGcucagcucGCGCCGCCugCUGGcGCUCa -3' miRNA: 3'- -CCGGCcau-----UGCGGUGGugGAUU-CGAG- -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 13629 | 0.69 | 0.402547 |
Target: 5'- aGCCGGggcAGCGCCGCCcguaaacGCCgguGGCa- -3' miRNA: 3'- cCGGCCa--UUGCGGUGG-------UGGau-UCGag -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 15750 | 0.66 | 0.571137 |
Target: 5'- cGCCGGUAcgcccGCGCCAagaGCCggcGGCg- -3' miRNA: 3'- cCGGCCAU-----UGCGGUgg-UGGau-UCGag -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 15831 | 0.82 | 0.051274 |
Target: 5'- cGCCGGgcgauGCGCCGCCGCC--GGCUCu -3' miRNA: 3'- cCGGCCau---UGCGGUGGUGGauUCGAG- -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 17092 | 0.7 | 0.340503 |
Target: 5'- uGCCGcGcgcGCGCUACCACCcGAGCaUCg -3' miRNA: 3'- cCGGC-Cau-UGCGGUGGUGGaUUCG-AG- -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 17219 | 0.66 | 0.590258 |
Target: 5'- aGGCUGGcGGggaacgggaugcguCGCCACCACCaccGGCg- -3' miRNA: 3'- -CCGGCCaUU--------------GCGGUGGUGGau-UCGag -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 18511 | 0.69 | 0.38476 |
Target: 5'- cGGUCGGUGgucacaucguGCGUgggCGCCACCgugGGGUUCc -3' miRNA: 3'- -CCGGCCAU----------UGCG---GUGGUGGa--UUCGAG- -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 19753 | 0.66 | 0.537795 |
Target: 5'- cGGCCGGguggUGGCGCCcUCGCUgguGGaCUCc -3' miRNA: 3'- -CCGGCC----AUUGCGGuGGUGGau-UC-GAG- -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 19858 | 0.67 | 0.526825 |
Target: 5'- uGCgGGgcuGCGCUACCGCUccauGCUCc -3' miRNA: 3'- cCGgCCau-UGCGGUGGUGGauu-CGAG- -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 20721 | 0.71 | 0.276891 |
Target: 5'- cGGCCuGGUaguccuuguaguuGACcucguCCACCACCUGgcGGCUCa -3' miRNA: 3'- -CCGG-CCA-------------UUGc----GGUGGUGGAU--UCGAG- -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 20847 | 0.67 | 0.494452 |
Target: 5'- cGCUGGUGACGgCGCUcuuGCCgaUGAGCg- -3' miRNA: 3'- cCGGCCAUUGCgGUGG---UGG--AUUCGag -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 21073 | 1.12 | 0.000323 |
Target: 5'- cGGCCGGUAACGCCACCACCUAAGCUCu -3' miRNA: 3'- -CCGGCCAUUGCGGUGGUGGAUUCGAG- -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 21459 | 0.67 | 0.526825 |
Target: 5'- uGCagGGUccGCGCUcgGCCGCCUGcgGGCUCu -3' miRNA: 3'- cCGg-CCAu-UGCGG--UGGUGGAU--UCGAG- -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 22416 | 0.72 | 0.243227 |
Target: 5'- cGCCGGguGCGCCACCaACC--AGUUCu -3' miRNA: 3'- cCGGCCauUGCGGUGG-UGGauUCGAG- -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 23644 | 0.66 | 0.558844 |
Target: 5'- aGGCUGGgcucgagcaUGACGgCGacuaccuCCACCUGAGCg- -3' miRNA: 3'- -CCGGCC---------AUUGCgGU-------GGUGGAUUCGag -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 26474 | 0.67 | 0.494452 |
Target: 5'- cGCCGGUGcCGCCcaggacuacuCCACCcgcaugaauuGGCUCa -3' miRNA: 3'- cCGGCCAUuGCGGu---------GGUGGau--------UCGAG- -5' |
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408 | 3' | -55.6 | AC_000011.1 | + | 26737 | 0.69 | 0.38476 |
Target: 5'- uGGCgGGcGGCGCCACCcugugucgucACCgccccGCUCa -3' miRNA: 3'- -CCGgCCaUUGCGGUGG----------UGGauu--CGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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