miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
408 5' -62.7 AC_000011.1 + 21108 1.1 0.000093
Target:  5'- uGCAAGCCAUGGCCGCGGGCUCCGGCGa -3'
miRNA:   3'- -CGUUCGGUACCGGCGCCCGAGGCCGC- -5'
408 5' -62.7 AC_000011.1 + 15976 0.73 0.075182
Target:  5'- ---cGCCGUGGCCGCgcgucuccGGGUccugCCGGCGc -3'
miRNA:   3'- cguuCGGUACCGGCG--------CCCGa---GGCCGC- -5'
408 5' -62.7 AC_000011.1 + 18057 0.73 0.081827
Target:  5'- gGCAAGuCCAgGGUCGCGGGCUuuUCGGg- -3'
miRNA:   3'- -CGUUC-GGUaCCGGCGCCCGA--GGCCgc -5'
408 5' -62.7 AC_000011.1 + 11494 0.71 0.114103
Target:  5'- cCGAGCCcgagGGCCGCuGGCUCCuggaccuGGUGa -3'
miRNA:   3'- cGUUCGGua--CCGGCGcCCGAGG-------CCGC- -5'
408 5' -62.7 AC_000011.1 + 18069 0.71 0.114419
Target:  5'- cGguGGCCGUGGcCCGCGcGCgacCCGGgGg -3'
miRNA:   3'- -CguUCGGUACC-GGCGCcCGa--GGCCgC- -5'
408 5' -62.7 AC_000011.1 + 3704 0.71 0.117626
Target:  5'- cGCGgaauGGCCAUGGgCGCcGGCUacuaCGGCa -3'
miRNA:   3'- -CGU----UCGGUACCgGCGcCCGAg---GCCGc -5'
408 5' -62.7 AC_000011.1 + 15864 0.7 0.124292
Target:  5'- cGCGccgcGCgCAUGGCgGgGGuGCUCCGGUGc -3'
miRNA:   3'- -CGUu---CG-GUACCGgCgCC-CGAGGCCGC- -5'
408 5' -62.7 AC_000011.1 + 15813 0.7 0.131307
Target:  5'- cGCcGGCUcuUGG-CGCGGGCguaCCGGCGc -3'
miRNA:   3'- -CGuUCGGu-ACCgGCGCCCGa--GGCCGC- -5'
408 5' -62.7 AC_000011.1 + 23060 0.7 0.138686
Target:  5'- -gGAGCUGgcGGCCGUGGGCUucagcuaccccCCGGUGc -3'
miRNA:   3'- cgUUCGGUa-CCGGCGCCCGA-----------GGCCGC- -5'
408 5' -62.7 AC_000011.1 + 11232 0.69 0.150063
Target:  5'- cGCGcGCaCGUGGCCGCGGccaaccuGgUCaCGGCGu -3'
miRNA:   3'- -CGUuCG-GUACCGGCGCC-------CgAG-GCCGC- -5'
408 5' -62.7 AC_000011.1 + 24314 0.69 0.158824
Target:  5'- gGCAAGcCCGUGGUCaGCGacgagcagcuGGC-CCGGUGg -3'
miRNA:   3'- -CGUUC-GGUACCGG-CGC----------CCGaGGCCGC- -5'
408 5' -62.7 AC_000011.1 + 5858 0.69 0.167594
Target:  5'- uGUAGGCCAcgUGaCCGgGGGUcCCGGCc -3'
miRNA:   3'- -CGUUCGGU--ACcGGCgCCCGaGGCCGc -5'
408 5' -62.7 AC_000011.1 + 35746 0.68 0.172141
Target:  5'- cCAGGCa--GGCCaCGGGguCUCCGGCGc -3'
miRNA:   3'- cGUUCGguaCCGGcGCCC--GAGGCCGC- -5'
408 5' -62.7 AC_000011.1 + 18146 0.68 0.176796
Target:  5'- gGCGGGCgGUGcccccgggucGCgCGCGGGCcacggccaCCGGCGg -3'
miRNA:   3'- -CGUUCGgUAC----------CG-GCGCCCGa-------GGCCGC- -5'
408 5' -62.7 AC_000011.1 + 11553 0.68 0.191441
Target:  5'- -gGAGCCAgcGGCCcuCGGGCU-CGGUGa -3'
miRNA:   3'- cgUUCGGUa-CCGGc-GCCCGAgGCCGC- -5'
408 5' -62.7 AC_000011.1 + 16712 0.67 0.207141
Target:  5'- uCAAGCagGUGGCCcCGGGCcUgGGCGu -3'
miRNA:   3'- cGUUCGg-UACCGGcGCCCGaGgCCGC- -5'
408 5' -62.7 AC_000011.1 + 13926 0.67 0.207141
Target:  5'- aGCAGGCgAUGGCgGCGG----CGGCGa -3'
miRNA:   3'- -CGUUCGgUACCGgCGCCcgagGCCGC- -5'
408 5' -62.7 AC_000011.1 + 8242 0.67 0.22394
Target:  5'- -gGAGUCA-GGUCaGUGGGCagCGGCGg -3'
miRNA:   3'- cgUUCGGUaCCGG-CGCCCGagGCCGC- -5'
408 5' -62.7 AC_000011.1 + 12379 0.66 0.235772
Target:  5'- cGCgAGGCCGUGGCCcagcGCGagcGGUUCCaccGCGa -3'
miRNA:   3'- -CG-UUCGGUACCGG----CGC---CCGAGGc--CGC- -5'
408 5' -62.7 AC_000011.1 + 5349 0.66 0.241882
Target:  5'- ---cGCCucGGCCGCGuGGCcUuuGGCGc -3'
miRNA:   3'- cguuCGGuaCCGGCGC-CCG-AggCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.