Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
411 | 3' | -60.8 | AC_000011.1 | + | 22368 | 1.1 | 0.000149 |
Target: 5'- gGCGCACCCGGCGUCGUGCACGCAGCAg -3' miRNA: 3'- -CGCGUGGGCCGCAGCACGUGCGUCGU- -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 8469 | 0.66 | 0.341285 |
Target: 5'- cGCGCGCCgGGCGgcaggggCG-GCuCGgGGCc -3' miRNA: 3'- -CGCGUGGgCCGCa------GCaCGuGCgUCGu -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 15927 | 0.66 | 0.333177 |
Target: 5'- cGCGCgGCCaCGGCGgCG-GCA-GCGGCc -3' miRNA: 3'- -CGCG-UGG-GCCGCaGCaCGUgCGUCGu -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 22599 | 0.66 | 0.324423 |
Target: 5'- cGCGCACCCGGUGcacucccaguucUUGUGggcgaucugggaaUGCGCGuGCAc -3' miRNA: 3'- -CGCGUGGGCCGC------------AGCAC-------------GUGCGU-CGU- -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 13882 | 0.66 | 0.319721 |
Target: 5'- uGCGUACCCGGaggguccuccucccuCGUacgagagCGUG-AUGCAGCAg -3' miRNA: 3'- -CGCGUGGGCC---------------GCA-------GCACgUGCGUCGU- -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 10186 | 0.67 | 0.294774 |
Target: 5'- gGgGCGCCgGGCGcgagguccUCGaGCAUGguGCGg -3' miRNA: 3'- -CgCGUGGgCCGC--------AGCaCGUGCguCGU- -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 15561 | 0.67 | 0.259907 |
Target: 5'- aCGCAacacCCCGuGCG-CGUGCGCG-GGCAc -3' miRNA: 3'- cGCGU----GGGC-CGCaGCACGUGCgUCGU- -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 22189 | 0.67 | 0.259907 |
Target: 5'- aCGCACCCGGgcuUGUgGuUGCAauCGCAGUg -3' miRNA: 3'- cGCGUGGGCC---GCAgC-ACGU--GCGUCGu -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 5298 | 0.68 | 0.222591 |
Target: 5'- gGCGC-CCUGcGCGUCG-GCcAgGUAGCAa -3' miRNA: 3'- -CGCGuGGGC-CGCAGCaCG-UgCGUCGU- -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 9385 | 0.69 | 0.216834 |
Target: 5'- gGCGCGCCCGuCcUCGcgggGC-CGCAGCGu -3' miRNA: 3'- -CGCGUGGGCcGcAGCa---CGuGCGUCGU- -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 16259 | 0.72 | 0.129686 |
Target: 5'- uGCGCGaguucgcccCCCGGCGgcgCGUGCA-GUGGCGc -3' miRNA: 3'- -CGCGU---------GGGCCGCa--GCACGUgCGUCGU- -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 15781 | 0.75 | 0.069059 |
Target: 5'- gGCGCaucGCCCGGCGgcacCGgagcacccccgccaUGCGCGCGGCGc -3' miRNA: 3'- -CGCG---UGGGCCGCa---GC--------------ACGUGCGUCGU- -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 10994 | 0.76 | 0.058613 |
Target: 5'- gGCGCGCCUgggGGCGUCGUcGCcggaGCGGCAc -3' miRNA: 3'- -CGCGUGGG---CCGCAGCA-CGug--CGUCGU- -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 17093 | 0.67 | 0.273434 |
Target: 5'- cCGCACCagGGCGgcagggGUGguUGCAGCGg -3' miRNA: 3'- cGCGUGGg-CCGCag----CACguGCGUCGU- -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 24043 | 0.67 | 0.259245 |
Target: 5'- gGCGCcgggACCCagguugaaaagGGCGUCG-GCgcgggugcgguugGCGCGGCAg -3' miRNA: 3'- -CGCG----UGGG-----------CCGCAGCaCG-------------UGCGUCGU- -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 21464 | 0.68 | 0.240647 |
Target: 5'- aGCGguCCuCGGUGgccagggCGcUGCgGCGCAGCAg -3' miRNA: 3'- -CGCguGG-GCCGCa------GC-ACG-UGCGUCGU- -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 16626 | 0.68 | 0.222591 |
Target: 5'- cGCGCuugaaccCCCGGCG-CG-GCGCcgcggucgGCAGCAc -3' miRNA: 3'- -CGCGu------GGGCCGCaGCaCGUG--------CGUCGU- -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 17140 | 0.69 | 0.205702 |
Target: 5'- cGCGCGCgCGGCaggGUCagagGUGCGCggccGCGGCGg -3' miRNA: 3'- -CGCGUGgGCCG---CAG----CACGUG----CGUCGU- -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 19963 | 0.7 | 0.184918 |
Target: 5'- gGgGCACCUGGaUGUgGaaggGCACGUAGCGc -3' miRNA: 3'- -CgCGUGGGCC-GCAgCa---CGUGCGUCGU- -5' |
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411 | 3' | -60.8 | AC_000011.1 | + | 16995 | 0.66 | 0.333177 |
Target: 5'- aGCGCgugccgcgguaGCCCGGCGUgGggaugauggaaGgAUGCAGCGc -3' miRNA: 3'- -CGCG-----------UGGGCCGCAgCa----------CgUGCGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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