Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
411 | 3' | -60.8 | AC_000011.1 | + | 16626 | 0.68 | 0.222591 |
Target: 5'- cGCGCuugaaccCCCGGCG-CG-GCGCcgcggucgGCAGCAc -3' miRNA: 3'- -CGCGu------GGGCCGCaGCaCGUG--------CGUCGU- -5' |
|||||||
411 | 3' | -60.8 | AC_000011.1 | + | 17140 | 0.69 | 0.205702 |
Target: 5'- cGCGCGCgCGGCaggGUCagagGUGCGCggccGCGGCGg -3' miRNA: 3'- -CGCGUGgGCCG---CAG----CACGUG----CGUCGU- -5' |
|||||||
411 | 3' | -60.8 | AC_000011.1 | + | 19963 | 0.7 | 0.184918 |
Target: 5'- gGgGCACCUGGaUGUgGaaggGCACGUAGCGc -3' miRNA: 3'- -CgCGUGGGCC-GCAgCa---CGUGCGUCGU- -5' |
|||||||
411 | 3' | -60.8 | AC_000011.1 | + | 16058 | 0.72 | 0.126136 |
Target: 5'- cGCGCACaccgguggCGGCGUCGcGCACcCAGUAc -3' miRNA: 3'- -CGCGUGg-------GCCGCAGCaCGUGcGUCGU- -5' |
|||||||
411 | 3' | -60.8 | AC_000011.1 | + | 16995 | 0.66 | 0.333177 |
Target: 5'- aGCGCgugccgcgguaGCCCGGCGUgGggaugauggaaGgAUGCAGCGc -3' miRNA: 3'- -CGCG-----------UGGGCCGCAgCa----------CgUGCGUCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home