Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 414 | 5' | -57.1 | AC_000011.1 | + | 25167 | 0.68 | 0.381271 |
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Target: 5'- gCgGUgCGGCGugcAGAGGUuGCAGCGGCAGu -3' miRNA: 3'- -GgCG-GCUGC---UCUUCGuCGUCGUCGUC- -5' |
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| 414 | 5' | -57.1 | AC_000011.1 | + | 25757 | 0.72 | 0.205914 |
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Target: 5'- cCCGCCGAgGAcGAcggucuGGCGGCGGCuGCu- -3' miRNA: 3'- -GGCGGCUgCU-CU------UCGUCGUCGuCGuc -5' |
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| 414 | 5' | -57.1 | AC_000011.1 | + | 25989 | 0.66 | 0.478837 |
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Target: 5'- cCCGCgGugGAaGAGCAGgUAGCGcCGGg -3' miRNA: 3'- -GGCGgCugCUcUUCGUC-GUCGUcGUC- -5' |
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| 414 | 5' | -57.1 | AC_000011.1 | + | 25999 | 0.72 | 0.193389 |
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Target: 5'- -aGCCccuacuacuuccaaGA--AGAGGCAGCAGCAGCAGa -3' miRNA: 3'- ggCGG--------------CUgcUCUUCGUCGUCGUCGUC- -5' |
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| 414 | 5' | -57.1 | AC_000011.1 | + | 26053 | 0.66 | 0.478837 |
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Target: 5'- aCCaGCa-GCuAGAaaauccacAGCGGCGGCAGCAGg -3' miRNA: 3'- -GG-CGgcUGcUCU--------UCGUCGUCGUCGUC- -5' |
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| 414 | 5' | -57.1 | AC_000011.1 | + | 27212 | 0.7 | 0.275801 |
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Target: 5'- cCCGagCGAagcaGcGGAAGCGGCGGCAGUGGu -3' miRNA: 3'- -GGCg-GCUg---C-UCUUCGUCGUCGUCGUC- -5' |
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| 414 | 5' | -57.1 | AC_000011.1 | + | 31062 | 0.66 | 0.468513 |
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Target: 5'- -gGUCGACGGGAcggGGgAGCAcuaaCAGCAGa -3' miRNA: 3'- ggCGGCUGCUCU---UCgUCGUc---GUCGUC- -5' |
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| 414 | 5' | -57.1 | AC_000011.1 | + | 33881 | 0.72 | 0.200385 |
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Target: 5'- -aGCuUGACGG--AGCGGCGGCGGCAGc -3' miRNA: 3'- ggCG-GCUGCUcuUCGUCGUCGUCGUC- -5' |
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| 414 | 5' | -57.1 | AC_000011.1 | + | 34729 | 0.67 | 0.399713 |
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Target: 5'- gCCGCCGGCGAucGGUGuGCAGC-GCc- -3' miRNA: 3'- -GGCGGCUGCUcuUCGU-CGUCGuCGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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