miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
414 5' -57.1 AC_000011.1 + 14806 0.67 0.412001
Target:  5'- aCCGCCucuaccgaggucaggGGCGAuaauuuugcaagcGccGCAGCAGUGGCAGc -3'
miRNA:   3'- -GGCGG---------------CUGCU-------------CuuCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 15464 0.71 0.248406
Target:  5'- -gGCCuuguaGACGuAGggGCAGguGCGGCGu -3'
miRNA:   3'- ggCGG-----CUGC-UCuuCGUCguCGUCGUc -5'
414 5' -57.1 AC_000011.1 + 15753 0.69 0.313372
Target:  5'- uCCaCgGugGAGAcgGGC-GCGGCGGCGGg -3'
miRNA:   3'- -GGcGgCugCUCU--UCGuCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 15757 0.66 0.458306
Target:  5'- aCGCCcGCGccaAGAGcCGGCGGCGGCGc -3'
miRNA:   3'- gGCGGcUGC---UCUUcGUCGUCGUCGUc -5'
414 5' -57.1 AC_000011.1 + 15907 0.78 0.073865
Target:  5'- gCGCCGGCaggacccgGAGAcgcgcggccacGGCGGCGGCAGCGGc -3'
miRNA:   3'- gGCGGCUG--------CUCU-----------UCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 17048 0.7 0.261812
Target:  5'- gCGgCGGCGAGugguggucuuGCGGCGGCGGCu- -3'
miRNA:   3'- gGCgGCUGCUCuu--------CGUCGUCGUCGuc -5'
414 5' -57.1 AC_000011.1 + 17094 0.68 0.372266
Target:  5'- uCCGCaccagGGCGgcAGggGUgguuGCAGCGGCGGu -3'
miRNA:   3'- -GGCGg----CUGC--UCuuCGu---CGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 17796 0.69 0.329451
Target:  5'- cCCGCCGGCuccgugGAGAuGCcGCAGguGgAGg -3'
miRNA:   3'- -GGCGGCUG------CUCUuCGuCGUCguCgUC- -5'
414 5' -57.1 AC_000011.1 + 20830 0.69 0.346131
Target:  5'- uUGCCGAUGAGcGGGUAGgGGUaguuGGCGGg -3'
miRNA:   3'- gGCGGCUGCUC-UUCGUCgUCG----UCGUC- -5'
414 5' -57.1 AC_000011.1 + 22477 0.66 0.458306
Target:  5'- aCCGCUG--GGGgcGCAGCGuGguGCAGc -3'
miRNA:   3'- -GGCGGCugCUCuuCGUCGU-CguCGUC- -5'
414 5' -57.1 AC_000011.1 + 23069 0.73 0.169859
Target:  5'- -gGCCGAgGAGGAGCuGGCGGCcGUGGg -3'
miRNA:   3'- ggCGGCUgCUCUUCG-UCGUCGuCGUC- -5'
414 5' -57.1 AC_000011.1 + 23088 0.69 0.329451
Target:  5'- uUGCgGGguuucuucuUGGGcGGCAGCGGCGGCGGa -3'
miRNA:   3'- gGCGgCU---------GCUCuUCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 23252 0.66 0.489271
Target:  5'- gCCGCCG-CGAcuuGGCGGaUGGCuGGCAGa -3'
miRNA:   3'- -GGCGGCuGCUcu-UCGUC-GUCG-UCGUC- -5'
414 5' -57.1 AC_000011.1 + 23415 1.11 0.000253
Target:  5'- aCCGCCGACGAGAAGCAGCAGCAGCAGa -3'
miRNA:   3'- -GGCGGCUGCUCUUCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 23530 0.66 0.477799
Target:  5'- aCgGCCG-CGucGGAGGUGGCggggcugGGCGGCGGg -3'
miRNA:   3'- -GgCGGCuGC--UCUUCGUCG-------UCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 23550 0.68 0.354694
Target:  5'- cCCGCgGAgcaCGAGGAGgAGCuGGCAGUg- -3'
miRNA:   3'- -GGCGgCU---GCUCUUCgUCG-UCGUCGuc -5'
414 5' -57.1 AC_000011.1 + 24018 0.69 0.337716
Target:  5'- gCGUCGGCGcGGguGCGGUuggcGCGGCAGg -3'
miRNA:   3'- gGCGGCUGC-UCuuCGUCGu---CGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 24498 0.72 0.194984
Target:  5'- gCGUCGGCGaAGAAGCGGC-GCAGgCAc -3'
miRNA:   3'- gGCGGCUGC-UCUUCGUCGuCGUC-GUc -5'
414 5' -57.1 AC_000011.1 + 24675 0.67 0.418714
Target:  5'- uCUGCCacaccuggcaGACGGGcauGGGCGuGUGGCAGCAGu -3'
miRNA:   3'- -GGCGG----------CUGCUC---UUCGU-CGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 25075 0.66 0.468513
Target:  5'- -aGuuGGCcAGgcGCAGCAgGUAGCAGu -3'
miRNA:   3'- ggCggCUGcUCuuCGUCGU-CGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.