miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
414 5' -57.1 AC_000011.1 + 15753 0.69 0.313372
Target:  5'- uCCaCgGugGAGAcgGGC-GCGGCGGCGGg -3'
miRNA:   3'- -GGcGgCugCUCU--UCGuCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 17796 0.69 0.329451
Target:  5'- cCCGCCGGCuccgugGAGAuGCcGCAGguGgAGg -3'
miRNA:   3'- -GGCGGCUG------CUCUuCGuCGUCguCgUC- -5'
414 5' -57.1 AC_000011.1 + 23088 0.69 0.329451
Target:  5'- uUGCgGGguuucuucuUGGGcGGCAGCGGCGGCGGa -3'
miRNA:   3'- gGCGgCU---------GCUCuUCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 14750 0.69 0.329451
Target:  5'- aCGCCuAUGAGAaaAGCAaggaggauGCAGCAGCuGa -3'
miRNA:   3'- gGCGGcUGCUCU--UCGU--------CGUCGUCGuC- -5'
414 5' -57.1 AC_000011.1 + 24018 0.69 0.337716
Target:  5'- gCGUCGGCGcGGguGCGGUuggcGCGGCAGg -3'
miRNA:   3'- gGCGGCUGC-UCuuCGUCGu---CGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 10287 0.69 0.345282
Target:  5'- cUCGCgGACGcgguuccAGAuguuGC-GCAGCGGCAGg -3'
miRNA:   3'- -GGCGgCUGC-------UCUu---CGuCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 20830 0.69 0.346131
Target:  5'- uUGCCGAUGAGcGGGUAGgGGUaguuGGCGGg -3'
miRNA:   3'- gGCGGCUGCUC-UUCGUCgUCG----UCGUC- -5'
414 5' -57.1 AC_000011.1 + 23550 0.68 0.354694
Target:  5'- cCCGCgGAgcaCGAGGAGgAGCuGGCAGUg- -3'
miRNA:   3'- -GGCGgCU---GCUCUUCgUCG-UCGUCGuc -5'
414 5' -57.1 AC_000011.1 + 17094 0.68 0.372266
Target:  5'- uCCGCaccagGGCGgcAGggGUgguuGCAGCGGCGGu -3'
miRNA:   3'- -GGCGg----CUGC--UCuuCGu---CGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 25167 0.68 0.381271
Target:  5'- gCgGUgCGGCGugcAGAGGUuGCAGCGGCAGu -3'
miRNA:   3'- -GgCG-GCUGC---UCUUCGuCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 13350 0.68 0.390421
Target:  5'- uCCgGCCG-CGAGGGuGCuGCcGCGGCGGu -3'
miRNA:   3'- -GG-CGGCuGCUCUU-CGuCGuCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 13701 0.68 0.390421
Target:  5'- uCCGCCGACGAc-AGCAGCGuGUuggacuugGGUGGg -3'
miRNA:   3'- -GGCGGCUGCUcuUCGUCGU-CG--------UCGUC- -5'
414 5' -57.1 AC_000011.1 + 34729 0.67 0.399713
Target:  5'- gCCGCCGGCGAucGGUGuGCAGC-GCc- -3'
miRNA:   3'- -GGCGGCUGCUcuUCGU-CGUCGuCGuc -5'
414 5' -57.1 AC_000011.1 + 3037 0.67 0.399713
Target:  5'- cCCGCCGGCGcAGGucAGCaucuGGUAGCcGCGc -3'
miRNA:   3'- -GGCGGCUGC-UCU--UCG----UCGUCGuCGUc -5'
414 5' -57.1 AC_000011.1 + 8235 0.67 0.399713
Target:  5'- aCGCUG-CG-GAgucaggucagugGGCAGCGGCGGCGc -3'
miRNA:   3'- gGCGGCuGCuCU------------UCGUCGUCGUCGUc -5'
414 5' -57.1 AC_000011.1 + 14806 0.67 0.412001
Target:  5'- aCCGCCucuaccgaggucaggGGCGAuaauuuugcaagcGccGCAGCAGUGGCAGc -3'
miRNA:   3'- -GGCGG---------------CUGCU-------------CuuCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 11414 0.67 0.41487
Target:  5'- gCCGCUGACGGc--GCAGCuguuccuggugguGCAGCAu -3'
miRNA:   3'- -GGCGGCUGCUcuuCGUCGu------------CGUCGUc -5'
414 5' -57.1 AC_000011.1 + 24675 0.67 0.418714
Target:  5'- uCUGCCacaccuggcaGACGGGcauGGGCGuGUGGCAGCAGu -3'
miRNA:   3'- -GGCGG----------CUGCUC---UUCGU-CGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 15757 0.66 0.458306
Target:  5'- aCGCCcGCGccaAGAGcCGGCGGCGGCGc -3'
miRNA:   3'- gGCGGcUGC---UCUUcGUCGUCGUCGUc -5'
414 5' -57.1 AC_000011.1 + 11567 0.66 0.458306
Target:  5'- gCCGCUGucCGAGAAGCuGGCGGCcauCAa -3'
miRNA:   3'- -GGCGGCu-GCUCUUCG-UCGUCGuc-GUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.