Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
414 | 5' | -57.1 | AC_000011.1 | + | 17094 | 0.68 | 0.372266 |
Target: 5'- uCCGCaccagGGCGgcAGggGUgguuGCAGCGGCGGu -3' miRNA: 3'- -GGCGg----CUGC--UCuuCGu---CGUCGUCGUC- -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 23550 | 0.68 | 0.354694 |
Target: 5'- cCCGCgGAgcaCGAGGAGgAGCuGGCAGUg- -3' miRNA: 3'- -GGCGgCU---GCUCUUCgUCG-UCGUCGuc -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 20830 | 0.69 | 0.346131 |
Target: 5'- uUGCCGAUGAGcGGGUAGgGGUaguuGGCGGg -3' miRNA: 3'- gGCGGCUGCUC-UUCGUCgUCG----UCGUC- -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 10287 | 0.69 | 0.345282 |
Target: 5'- cUCGCgGACGcgguuccAGAuguuGC-GCAGCGGCAGg -3' miRNA: 3'- -GGCGgCUGC-------UCUu---CGuCGUCGUCGUC- -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 24018 | 0.69 | 0.337716 |
Target: 5'- gCGUCGGCGcGGguGCGGUuggcGCGGCAGg -3' miRNA: 3'- gGCGGCUGC-UCuuCGUCGu---CGUCGUC- -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 17796 | 0.69 | 0.329451 |
Target: 5'- cCCGCCGGCuccgugGAGAuGCcGCAGguGgAGg -3' miRNA: 3'- -GGCGGCUG------CUCUuCGuCGUCguCgUC- -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 14750 | 0.69 | 0.329451 |
Target: 5'- aCGCCuAUGAGAaaAGCAaggaggauGCAGCAGCuGa -3' miRNA: 3'- gGCGGcUGCUCU--UCGU--------CGUCGUCGuC- -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 23088 | 0.69 | 0.329451 |
Target: 5'- uUGCgGGguuucuucuUGGGcGGCAGCGGCGGCGGa -3' miRNA: 3'- gGCGgCU---------GCUCuUCGUCGUCGUCGUC- -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 15753 | 0.69 | 0.313372 |
Target: 5'- uCCaCgGugGAGAcgGGC-GCGGCGGCGGg -3' miRNA: 3'- -GGcGgCugCUCU--UCGuCGUCGUCGUC- -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 13922 | 0.69 | 0.305558 |
Target: 5'- aUGCagcaGGCGAu-GGCGGCGGCGGCGa -3' miRNA: 3'- gGCGg---CUGCUcuUCGUCGUCGUCGUc -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 8490 | 0.7 | 0.297895 |
Target: 5'- -nGCuCGGgGcccGGAGGCAGgGGCGGCAGg -3' miRNA: 3'- ggCG-GCUgC---UCUUCGUCgUCGUCGUC- -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 27212 | 0.7 | 0.275801 |
Target: 5'- cCCGagCGAagcaGcGGAAGCGGCGGCAGUGGu -3' miRNA: 3'- -GGCg-GCUg---C-UCUUCGUCGUCGUCGUC- -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 9877 | 0.7 | 0.268733 |
Target: 5'- gCGCgGGCGAGGAGgAGguGCccguggAGCGGc -3' miRNA: 3'- gGCGgCUGCUCUUCgUCguCG------UCGUC- -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 17048 | 0.7 | 0.261812 |
Target: 5'- gCGgCGGCGAGugguggucuuGCGGCGGCGGCu- -3' miRNA: 3'- gGCgGCUGCUCuu--------CGUCGUCGUCGuc -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 15464 | 0.71 | 0.248406 |
Target: 5'- -gGCCuuguaGACGuAGggGCAGguGCGGCGu -3' miRNA: 3'- ggCGG-----CUGC-UCuuCGUCguCGUCGUc -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 6642 | 0.71 | 0.2233 |
Target: 5'- aUGCCGAUGuagguGggGUAGCAGCGccccccGCGGa -3' miRNA: 3'- gGCGGCUGCu----CuuCGUCGUCGU------CGUC- -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 25757 | 0.72 | 0.205914 |
Target: 5'- cCCGCCGAgGAcGAcggucuGGCGGCGGCuGCu- -3' miRNA: 3'- -GGCGGCUgCU-CU------UCGUCGUCGuCGuc -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 33881 | 0.72 | 0.200385 |
Target: 5'- -aGCuUGACGG--AGCGGCGGCGGCAGc -3' miRNA: 3'- ggCG-GCUGCUcuUCGUCGUCGUCGUC- -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 24498 | 0.72 | 0.194984 |
Target: 5'- gCGUCGGCGaAGAAGCGGC-GCAGgCAc -3' miRNA: 3'- gGCGGCUGC-UCUUCGUCGuCGUC-GUc -5' |
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414 | 5' | -57.1 | AC_000011.1 | + | 25999 | 0.72 | 0.193389 |
Target: 5'- -aGCCccuacuacuuccaaGA--AGAGGCAGCAGCAGCAGa -3' miRNA: 3'- ggCGG--------------CUgcUCUUCGUCGUCGUCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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