miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
414 5' -57.1 AC_000011.1 + 2070 0.79 0.067618
Target:  5'- aCGCCaACGucgccAGCAGCAGCAGCAGg -3'
miRNA:   3'- gGCGGcUGCucu--UCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 3037 0.67 0.399713
Target:  5'- cCCGCCGGCGcAGGucAGCaucuGGUAGCcGCGc -3'
miRNA:   3'- -GGCGGCUGC-UCU--UCG----UCGUCGuCGUc -5'
414 5' -57.1 AC_000011.1 + 3734 0.77 0.096093
Target:  5'- gCGCUGGCGgcAGAuGCAGCAGCuGCGGc -3'
miRNA:   3'- gGCGGCUGC--UCUuCGUCGUCGuCGUC- -5'
414 5' -57.1 AC_000011.1 + 6642 0.71 0.2233
Target:  5'- aUGCCGAUGuagguGggGUAGCAGCGccccccGCGGa -3'
miRNA:   3'- gGCGGCUGCu----CuuCGUCGUCGU------CGUC- -5'
414 5' -57.1 AC_000011.1 + 8235 0.67 0.399713
Target:  5'- aCGCUG-CG-GAgucaggucagugGGCAGCGGCGGCGc -3'
miRNA:   3'- gGCGGCuGCuCU------------UCGUCGUCGUCGUc -5'
414 5' -57.1 AC_000011.1 + 8456 0.74 0.151886
Target:  5'- gCGgCGGCGAGGacgcgcgccgGGCGGCAGgGGCGGc -3'
miRNA:   3'- gGCgGCUGCUCU----------UCGUCGUCgUCGUC- -5'
414 5' -57.1 AC_000011.1 + 8490 0.7 0.297895
Target:  5'- -nGCuCGGgGcccGGAGGCAGgGGCGGCAGg -3'
miRNA:   3'- ggCG-GCUgC---UCUUCGUCgUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 9877 0.7 0.268733
Target:  5'- gCGCgGGCGAGGAGgAGguGCccguggAGCGGc -3'
miRNA:   3'- gGCGgCUGCUCUUCgUCguCG------UCGUC- -5'
414 5' -57.1 AC_000011.1 + 10130 0.8 0.054961
Target:  5'- -aGCCGAUGAGGAaguGCGGCGGCGGCuGg -3'
miRNA:   3'- ggCGGCUGCUCUU---CGUCGUCGUCGuC- -5'
414 5' -57.1 AC_000011.1 + 10189 0.66 0.468513
Target:  5'- gCGCCGggcGCGAGGuccucgAGCAuGguGCGGUGGu -3'
miRNA:   3'- gGCGGC---UGCUCU------UCGU-CguCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 10287 0.69 0.345282
Target:  5'- cUCGCgGACGcgguuccAGAuguuGC-GCAGCGGCAGg -3'
miRNA:   3'- -GGCGgCUGC-------UCUu---CGuCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 11414 0.67 0.41487
Target:  5'- gCCGCUGACGGc--GCAGCuguuccuggugguGCAGCAu -3'
miRNA:   3'- -GGCGGCUGCUcuuCGUCGu------------CGUCGUc -5'
414 5' -57.1 AC_000011.1 + 11567 0.66 0.458306
Target:  5'- gCCGCUGucCGAGAAGCuGGCGGCcauCAa -3'
miRNA:   3'- -GGCGGCu-GCUCUUCG-UCGUCGuc-GUc -5'
414 5' -57.1 AC_000011.1 + 11899 0.74 0.15621
Target:  5'- gCCGCCgGGCcuuGGAGGCGGCGGCAGgAc -3'
miRNA:   3'- -GGCGG-CUGc--UCUUCGUCGUCGUCgUc -5'
414 5' -57.1 AC_000011.1 + 12121 0.66 0.468513
Target:  5'- gCGCUGACGAcccgcaaccccGAAGCcuuuAGaCAGCAGCc- -3'
miRNA:   3'- gGCGGCUGCU-----------CUUCG----UC-GUCGUCGuc -5'
414 5' -57.1 AC_000011.1 + 12788 0.8 0.056618
Target:  5'- gCCGCUGucCGuGAagggggccaccAGCAGCAGCAGCAGg -3'
miRNA:   3'- -GGCGGCu-GCuCU-----------UCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 13350 0.68 0.390421
Target:  5'- uCCgGCCG-CGAGGGuGCuGCcGCGGCGGu -3'
miRNA:   3'- -GG-CGGCuGCUCUU-CGuCGuCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 13701 0.68 0.390421
Target:  5'- uCCGCCGACGAc-AGCAGCGuGUuggacuugGGUGGg -3'
miRNA:   3'- -GGCGGCUGCUcuUCGUCGU-CG--------UCGUC- -5'
414 5' -57.1 AC_000011.1 + 13922 0.69 0.305558
Target:  5'- aUGCagcaGGCGAu-GGCGGCGGCGGCGa -3'
miRNA:   3'- gGCGg---CUGCUcuUCGUCGUCGUCGUc -5'
414 5' -57.1 AC_000011.1 + 14750 0.69 0.329451
Target:  5'- aCGCCuAUGAGAaaAGCAaggaggauGCAGCAGCuGa -3'
miRNA:   3'- gGCGGcUGCUCU--UCGU--------CGUCGUCGuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.