miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
414 5' -57.1 AC_000011.1 + 24675 0.67 0.418714
Target:  5'- uCUGCCacaccuggcaGACGGGcauGGGCGuGUGGCAGCAGu -3'
miRNA:   3'- -GGCGG----------CUGCUC---UUCGU-CGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 17796 0.69 0.329451
Target:  5'- cCCGCCGGCuccgugGAGAuGCcGCAGguGgAGg -3'
miRNA:   3'- -GGCGGCUG------CUCUuCGuCGUCguCgUC- -5'
414 5' -57.1 AC_000011.1 + 10287 0.69 0.345282
Target:  5'- cUCGCgGACGcgguuccAGAuguuGC-GCAGCGGCAGg -3'
miRNA:   3'- -GGCGgCUGC-------UCUu---CGuCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 23550 0.68 0.354694
Target:  5'- cCCGCgGAgcaCGAGGAGgAGCuGGCAGUg- -3'
miRNA:   3'- -GGCGgCU---GCUCUUCgUCG-UCGUCGuc -5'
414 5' -57.1 AC_000011.1 + 13350 0.68 0.390421
Target:  5'- uCCgGCCG-CGAGGGuGCuGCcGCGGCGGu -3'
miRNA:   3'- -GG-CGGCuGCUCUU-CGuCGuCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 13701 0.68 0.390421
Target:  5'- uCCGCCGACGAc-AGCAGCGuGUuggacuugGGUGGg -3'
miRNA:   3'- -GGCGGCUGCUcuUCGUCGU-CG--------UCGUC- -5'
414 5' -57.1 AC_000011.1 + 8235 0.67 0.399713
Target:  5'- aCGCUG-CG-GAgucaggucagugGGCAGCGGCGGCGc -3'
miRNA:   3'- gGCGGCuGCuCU------------UCGUCGUCGUCGUc -5'
414 5' -57.1 AC_000011.1 + 14806 0.67 0.412001
Target:  5'- aCCGCCucuaccgaggucaggGGCGAuaauuuugcaagcGccGCAGCAGUGGCAGc -3'
miRNA:   3'- -GGCGG---------------CUGCU-------------CuuCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 11414 0.67 0.41487
Target:  5'- gCCGCUGACGGc--GCAGCuguuccuggugguGCAGCAu -3'
miRNA:   3'- -GGCGGCUGCUcuuCGUCGu------------CGUCGUc -5'
414 5' -57.1 AC_000011.1 + 23088 0.69 0.329451
Target:  5'- uUGCgGGguuucuucuUGGGcGGCAGCGGCGGCGGa -3'
miRNA:   3'- gGCGgCU---------GCUCuUCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 14750 0.69 0.329451
Target:  5'- aCGCCuAUGAGAaaAGCAaggaggauGCAGCAGCuGa -3'
miRNA:   3'- gGCGGcUGCUCU--UCGU--------CGUCGUCGuC- -5'
414 5' -57.1 AC_000011.1 + 13922 0.69 0.305558
Target:  5'- aUGCagcaGGCGAu-GGCGGCGGCGGCGa -3'
miRNA:   3'- gGCGg---CUGCUcuUCGUCGUCGUCGUc -5'
414 5' -57.1 AC_000011.1 + 10130 0.8 0.054961
Target:  5'- -aGCCGAUGAGGAaguGCGGCGGCGGCuGg -3'
miRNA:   3'- ggCGGCUGCUCUU---CGUCGUCGUCGuC- -5'
414 5' -57.1 AC_000011.1 + 2070 0.79 0.067618
Target:  5'- aCGCCaACGucgccAGCAGCAGCAGCAGg -3'
miRNA:   3'- gGCGGcUGCucu--UCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 15907 0.78 0.073865
Target:  5'- gCGCCGGCaggacccgGAGAcgcgcggccacGGCGGCGGCAGCGGc -3'
miRNA:   3'- gGCGGCUG--------CUCU-----------UCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 8456 0.74 0.151886
Target:  5'- gCGgCGGCGAGGacgcgcgccgGGCGGCAGgGGCGGc -3'
miRNA:   3'- gGCgGCUGCUCU----------UCGUCGUCgUCGUC- -5'
414 5' -57.1 AC_000011.1 + 11899 0.74 0.15621
Target:  5'- gCCGCCgGGCcuuGGAGGCGGCGGCAGgAc -3'
miRNA:   3'- -GGCGG-CUGc--UCUUCGUCGUCGUCgUc -5'
414 5' -57.1 AC_000011.1 + 25999 0.72 0.193389
Target:  5'- -aGCCccuacuacuuccaaGA--AGAGGCAGCAGCAGCAGa -3'
miRNA:   3'- ggCGG--------------CUgcUCUUCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 6642 0.71 0.2233
Target:  5'- aUGCCGAUGuagguGggGUAGCAGCGccccccGCGGa -3'
miRNA:   3'- gGCGGCUGCu----CuuCGUCGUCGU------CGUC- -5'
414 5' -57.1 AC_000011.1 + 8490 0.7 0.297895
Target:  5'- -nGCuCGGgGcccGGAGGCAGgGGCGGCAGg -3'
miRNA:   3'- ggCG-GCUgC---UCUUCGUCgUCGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.