miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
414 5' -57.1 AC_000011.1 + 12788 0.8 0.056618
Target:  5'- gCCGCUGucCGuGAagggggccaccAGCAGCAGCAGCAGg -3'
miRNA:   3'- -GGCGGCu-GCuCU-----------UCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 22477 0.66 0.458306
Target:  5'- aCCGCUG--GGGgcGCAGCGuGguGCAGc -3'
miRNA:   3'- -GGCGGCugCUCuuCGUCGU-CguCGUC- -5'
414 5' -57.1 AC_000011.1 + 31062 0.66 0.468513
Target:  5'- -gGUCGACGGGAcggGGgAGCAcuaaCAGCAGa -3'
miRNA:   3'- ggCGGCUGCUCU---UCgUCGUc---GUCGUC- -5'
414 5' -57.1 AC_000011.1 + 25989 0.66 0.478837
Target:  5'- cCCGCgGugGAaGAGCAGgUAGCGcCGGg -3'
miRNA:   3'- -GGCGgCugCUcUUCGUC-GUCGUcGUC- -5'
414 5' -57.1 AC_000011.1 + 33881 0.72 0.200385
Target:  5'- -aGCuUGACGG--AGCGGCGGCGGCAGc -3'
miRNA:   3'- ggCG-GCUGCUcuUCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 25757 0.72 0.205914
Target:  5'- cCCGCCGAgGAcGAcggucuGGCGGCGGCuGCu- -3'
miRNA:   3'- -GGCGGCUgCU-CU------UCGUCGUCGuCGuc -5'
414 5' -57.1 AC_000011.1 + 17048 0.7 0.261812
Target:  5'- gCGgCGGCGAGugguggucuuGCGGCGGCGGCu- -3'
miRNA:   3'- gGCgGCUGCUCuu--------CGUCGUCGUCGuc -5'
414 5' -57.1 AC_000011.1 + 9877 0.7 0.268733
Target:  5'- gCGCgGGCGAGGAGgAGguGCccguggAGCGGc -3'
miRNA:   3'- gGCGgCUGCUCUUCgUCguCG------UCGUC- -5'
414 5' -57.1 AC_000011.1 + 24018 0.69 0.337716
Target:  5'- gCGUCGGCGcGGguGCGGUuggcGCGGCAGg -3'
miRNA:   3'- gGCGGCUGC-UCuuCGUCGu---CGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 3037 0.67 0.399713
Target:  5'- cCCGCCGGCGcAGGucAGCaucuGGUAGCcGCGc -3'
miRNA:   3'- -GGCGGCUGC-UCU--UCG----UCGUCGuCGUc -5'
414 5' -57.1 AC_000011.1 + 17094 0.68 0.372266
Target:  5'- uCCGCaccagGGCGgcAGggGUgguuGCAGCGGCGGu -3'
miRNA:   3'- -GGCGg----CUGC--UCuuCGu---CGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 15753 0.69 0.313372
Target:  5'- uCCaCgGugGAGAcgGGC-GCGGCGGCGGg -3'
miRNA:   3'- -GGcGgCugCUCU--UCGuCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 3734 0.77 0.096093
Target:  5'- gCGCUGGCGgcAGAuGCAGCAGCuGCGGc -3'
miRNA:   3'- gGCGGCUGC--UCUuCGUCGUCGuCGUC- -5'
414 5' -57.1 AC_000011.1 + 25167 0.68 0.381271
Target:  5'- gCgGUgCGGCGugcAGAGGUuGCAGCGGCAGu -3'
miRNA:   3'- -GgCG-GCUGC---UCUUCGuCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 23069 0.73 0.169859
Target:  5'- -gGCCGAgGAGGAGCuGGCGGCcGUGGg -3'
miRNA:   3'- ggCGGCUgCUCUUCG-UCGUCGuCGUC- -5'
414 5' -57.1 AC_000011.1 + 27212 0.7 0.275801
Target:  5'- cCCGagCGAagcaGcGGAAGCGGCGGCAGUGGu -3'
miRNA:   3'- -GGCg-GCUg---C-UCUUCGUCGUCGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 34729 0.67 0.399713
Target:  5'- gCCGCCGGCGAucGGUGuGCAGC-GCc- -3'
miRNA:   3'- -GGCGGCUGCUcuUCGU-CGUCGuCGuc -5'
414 5' -57.1 AC_000011.1 + 25075 0.66 0.468513
Target:  5'- -aGuuGGCcAGgcGCAGCAgGUAGCAGu -3'
miRNA:   3'- ggCggCUGcUCuuCGUCGU-CGUCGUC- -5'
414 5' -57.1 AC_000011.1 + 24498 0.72 0.194984
Target:  5'- gCGUCGGCGaAGAAGCGGC-GCAGgCAc -3'
miRNA:   3'- gGCGGCUGC-UCUUCGUCGuCGUC-GUc -5'
414 5' -57.1 AC_000011.1 + 15464 0.71 0.248406
Target:  5'- -gGCCuuguaGACGuAGggGCAGguGCGGCGu -3'
miRNA:   3'- ggCGG-----CUGC-UCuuCGUCguCGUCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.