miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
416 3' -58.1 AC_000011.1 + 15683 0.66 0.482141
Target:  5'- -cGUCGAcGGugGUgcgcgaccgCAcGCGGCccuuGAGGGCg -3'
miRNA:   3'- acUAGCU-CCugCA---------GU-CGCCG----CUCCCG- -5'
416 3' -58.1 AC_000011.1 + 8489 0.66 0.471954
Target:  5'- cGGcUCGGGGccCGgaggCAGgGGCGgcaGGGGCa -3'
miRNA:   3'- aCU-AGCUCCu-GCa---GUCgCCGC---UCCCG- -5'
416 3' -58.1 AC_000011.1 + 10684 0.66 0.470941
Target:  5'- cGGuUCGAGGcCGgccggauUCcGCGGCuaacGAGGGCg -3'
miRNA:   3'- aCU-AGCUCCuGC-------AGuCGCCG----CUCCCG- -5'
416 3' -58.1 AC_000011.1 + 5418 0.66 0.461876
Target:  5'- gGAcUUGAGGGCGUagagcuuGGgGGCGAGGa- -3'
miRNA:   3'- aCU-AGCUCCUGCAg------UCgCCGCUCCcg -5'
416 3' -58.1 AC_000011.1 + 18130 0.66 0.451913
Target:  5'- gGGUCGcgcgcGGGccACGgccacCGGCGGCaGGGGCu -3'
miRNA:   3'- aCUAGC-----UCC--UGCa----GUCGCCGcUCCCG- -5'
416 3' -58.1 AC_000011.1 + 10959 0.66 0.442069
Target:  5'- cGGUCGuggcuGGAaGUUgcugcuGgGGCGGGGGCa -3'
miRNA:   3'- aCUAGCu----CCUgCAGu-----CgCCGCUCCCG- -5'
416 3' -58.1 AC_000011.1 + 25753 0.66 0.442069
Target:  5'- ---cCGAGGACGaCGGUcuGGCGGcGGCu -3'
miRNA:   3'- acuaGCUCCUGCaGUCG--CCGCUcCCG- -5'
416 3' -58.1 AC_000011.1 + 5454 0.66 0.442069
Target:  5'- gGAcUCGGGGGCGUaGGCGuccGCGccgcaguGGGCg -3'
miRNA:   3'- aCU-AGCUCCUGCAgUCGC---CGCu------CCCG- -5'
416 3' -58.1 AC_000011.1 + 15040 0.66 0.442069
Target:  5'- ------cGGACGUCAccuGCGGCGuGGaGCa -3'
miRNA:   3'- acuagcuCCUGCAGU---CGCCGCuCC-CG- -5'
416 3' -58.1 AC_000011.1 + 16258 0.66 0.431382
Target:  5'- gUGcgCGAGuucgccccccggcGGCGcgugCAGUGGCGcGGGCg -3'
miRNA:   3'- -ACuaGCUC-------------CUGCa---GUCGCCGCuCCCG- -5'
416 3' -58.1 AC_000011.1 + 23464 0.67 0.37676
Target:  5'- --uUCu----CGUCGGCGGUGGGGGCa -3'
miRNA:   3'- acuAGcuccuGCAGUCGCCGCUCCCG- -5'
416 3' -58.1 AC_000011.1 + 23113 0.68 0.359331
Target:  5'- gUGGUCcugcAGGACGUCAGCcaggacaGCGAGGa- -3'
miRNA:   3'- -ACUAGc---UCCUGCAGUCGc------CGCUCCcg -5'
416 3' -58.1 AC_000011.1 + 23517 0.68 0.350831
Target:  5'- aGGUgGcGGGGC-UgGGCGGCG-GGGCg -3'
miRNA:   3'- aCUAgC-UCCUGcAgUCGCCGCuCCCG- -5'
416 3' -58.1 AC_000011.1 + 6427 0.68 0.349988
Target:  5'- -cGUCGGGGGgGUCGGCaucgauGGUGAagaugccGGGCa -3'
miRNA:   3'- acUAGCUCCUgCAGUCG------CCGCU-------CCCG- -5'
416 3' -58.1 AC_000011.1 + 20285 0.68 0.339995
Target:  5'- uUGcgCGAGGggauggagaugggcACGUUGGUGGCGuuGGCc -3'
miRNA:   3'- -ACuaGCUCC--------------UGCAGUCGCCGCucCCG- -5'
416 3' -58.1 AC_000011.1 + 9292 0.69 0.326195
Target:  5'- gGGagGGGGccuGCGUCgccGGCGGCGcacGGGCa -3'
miRNA:   3'- aCUagCUCC---UGCAG---UCGCCGCu--CCCG- -5'
416 3' -58.1 AC_000011.1 + 4485 0.69 0.310497
Target:  5'- aUGAUggCGAuGGGCccGUgGGCGGCGGccuGGGCa -3'
miRNA:   3'- -ACUA--GCU-CCUG--CAgUCGCCGCU---CCCG- -5'
416 3' -58.1 AC_000011.1 + 36427 0.69 0.302866
Target:  5'- aGA-CGGGcGAcCGUUAGgGGCG-GGGCg -3'
miRNA:   3'- aCUaGCUC-CU-GCAGUCgCCGCuCCCG- -5'
416 3' -58.1 AC_000011.1 + 23186 0.69 0.293163
Target:  5'- uUGGUcCGAGGccACG-CGGCGGUagguaugucucuucGGGGGCa -3'
miRNA:   3'- -ACUA-GCUCC--UGCaGUCGCCG--------------CUCCCG- -5'
416 3' -58.1 AC_000011.1 + 24030 0.69 0.288039
Target:  5'- aGGUUGAaaaGGGCGUCGGCG-CGGGuGCg -3'
miRNA:   3'- aCUAGCU---CCUGCAGUCGCcGCUCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.