miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
416 5' -58.2 AC_000011.1 + 6445 0.66 0.398215
Target:  5'- cUGCCccccuuCUGCuCGCgcaaggGCGgacGCCUCUGCu -3'
miRNA:   3'- cACGGu-----GACG-GCGa-----CGU---UGGAGACGu -5'
416 5' -58.2 AC_000011.1 + 13983 0.66 0.388834
Target:  5'- -cGCCGCcGCCGCcaucGCCUgCUGCAu -3'
miRNA:   3'- caCGGUGaCGGCGacguUGGA-GACGU- -5'
416 5' -58.2 AC_000011.1 + 8561 0.66 0.388834
Target:  5'- cGUGCCcCUGCCGCcccuGCCUCcggGCc -3'
miRNA:   3'- -CACGGuGACGGCGacguUGGAGa--CGu -5'
416 5' -58.2 AC_000011.1 + 30810 0.66 0.37413
Target:  5'- uUGCCuucaccaccugcauCUGCUGCUGUAGCauagUCUGCc -3'
miRNA:   3'- cACGGu-------------GACGGCGACGUUGg---AGACGu -5'
416 5' -58.2 AC_000011.1 + 15988 0.68 0.303292
Target:  5'- -gGCCGCUGCCGCcGCcguGGCCgc-GCGu -3'
miRNA:   3'- caCGGUGACGGCGaCG---UUGGagaCGU- -5'
416 5' -58.2 AC_000011.1 + 24989 0.68 0.303292
Target:  5'- aGUGCCcCccGCCGCUGUggAGCCaCUGCu -3'
miRNA:   3'- -CACGGuGa-CGGCGACG--UUGGaGACGu -5'
416 5' -58.2 AC_000011.1 + 22641 0.68 0.302513
Target:  5'- gGUGCgCGCUGUgGCUGCAcgggugcaccgagGCCgagggcaagCUGCGg -3'
miRNA:   3'- -CACG-GUGACGgCGACGU-------------UGGa--------GACGU- -5'
416 5' -58.2 AC_000011.1 + 3536 0.68 0.295581
Target:  5'- -aGCCGCUuCCGCU-CAugCUgCUGCAa -3'
miRNA:   3'- caCGGUGAcGGCGAcGUugGA-GACGU- -5'
416 5' -58.2 AC_000011.1 + 2133 0.69 0.259311
Target:  5'- cUGCUGCUGCUGCUgGCGACgUUgGCGu -3'
miRNA:   3'- cACGGUGACGGCGA-CGUUGgAGaCGU- -5'
416 5' -58.2 AC_000011.1 + 30310 0.69 0.245853
Target:  5'- aUGCCACUcgGaCCccagacgaGCUgGCAACCUCUGCu -3'
miRNA:   3'- cACGGUGA--C-GG--------CGA-CGUUGGAGACGu -5'
416 5' -58.2 AC_000011.1 + 27142 0.7 0.220677
Target:  5'- -gGaCCACUGCCGCcGCuuCCgCUGCu -3'
miRNA:   3'- caC-GGUGACGGCGaCGuuGGaGACGu -5'
416 5' -58.2 AC_000011.1 + 17067 0.7 0.208934
Target:  5'- -cGCCGCgGCCGC-GC-ACCUCUGa- -3'
miRNA:   3'- caCGGUGaCGGCGaCGuUGGAGACgu -5'
416 5' -58.2 AC_000011.1 + 14909 0.73 0.122097
Target:  5'- -aGCCGCcucgGCCGCUGCcACUgCUGCGg -3'
miRNA:   3'- caCGGUGa---CGGCGACGuUGGaGACGU- -5'
416 5' -58.2 AC_000011.1 + 3661 0.74 0.115213
Target:  5'- -cGCaGCUGCCGCcGCAGCUgCUGCAu -3'
miRNA:   3'- caCGgUGACGGCGaCGUUGGaGACGU- -5'
416 5' -58.2 AC_000011.1 + 17016 0.76 0.074081
Target:  5'- -cGCCGCaccGCCGCUGCAACCacccCUGCc -3'
miRNA:   3'- caCGGUGa--CGGCGACGUUGGa---GACGu -5'
416 5' -58.2 AC_000011.1 + 25094 1.08 0.00026
Target:  5'- aGUGCCACUGCCGCUGCAACCUCUGCAc -3'
miRNA:   3'- -CACGGUGACGGCGACGUUGGAGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.