miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4164 3' -49.4 NC_001664.1 + 1571 0.66 0.997755
Target:  5'- ---gGUCUGCACcuCGCGAAGuGU-UCCg -3'
miRNA:   3'- cuugUAGACGUGu-GCGUUUC-CGuAGG- -5'
4164 3' -49.4 NC_001664.1 + 1687 0.67 0.994845
Target:  5'- aGAGCGUCgacgGCGaGCGCGAcGGCcgCg -3'
miRNA:   3'- -CUUGUAGa---CGUgUGCGUUuCCGuaGg -5'
4164 3' -49.4 NC_001664.1 + 3517 0.71 0.951143
Target:  5'- gGAGCGUU---GC-CGUAGAGGCGUCCg -3'
miRNA:   3'- -CUUGUAGacgUGuGCGUUUCCGUAGG- -5'
4164 3' -49.4 NC_001664.1 + 4317 0.67 0.996249
Target:  5'- uGACAUCgggguccGCAgACGCGguucccccgGGGGCGUCg -3'
miRNA:   3'- cUUGUAGa------CGUgUGCGU---------UUCCGUAGg -5'
4164 3' -49.4 NC_001664.1 + 5830 1.12 0.007405
Target:  5'- aGAACAUCUGCACACGCAAAGGCAUCCc -3'
miRNA:   3'- -CUUGUAGACGUGUGCGUUUCCGUAGG- -5'
4164 3' -49.4 NC_001664.1 + 10536 0.67 0.994845
Target:  5'- --uCGUC-GCACAUGaCGAAGGCAaaagaaUCCc -3'
miRNA:   3'- cuuGUAGaCGUGUGC-GUUUCCGU------AGG- -5'
4164 3' -49.4 NC_001664.1 + 11192 0.69 0.980353
Target:  5'- -cACAUCguagaaucuUGCGCugGCucauGAAGGCcUCCa -3'
miRNA:   3'- cuUGUAG---------ACGUGugCG----UUUCCGuAGG- -5'
4164 3' -49.4 NC_001664.1 + 45031 0.7 0.959281
Target:  5'- -uACG-CUGCACAUGCuGAGGCAg-- -3'
miRNA:   3'- cuUGUaGACGUGUGCGuUUCCGUagg -5'
4164 3' -49.4 NC_001664.1 + 98969 0.81 0.502199
Target:  5'- aAGCAgUCUGCAUAUGC--AGGCAUCCa -3'
miRNA:   3'- cUUGU-AGACGUGUGCGuuUCCGUAGG- -5'
4164 3' -49.4 NC_001664.1 + 138039 0.68 0.987947
Target:  5'- uAACAUCUGCuaACGCGgCAAccGCAguUCCu -3'
miRNA:   3'- cUUGUAGACG--UGUGC-GUUucCGU--AGG- -5'
4164 3' -49.4 NC_001664.1 + 152652 0.66 0.997755
Target:  5'- ---gGUCUGCACcuCGCGAAGuGU-UCCg -3'
miRNA:   3'- cuugUAGACGUGu-GCGUUUC-CGuAGG- -5'
4164 3' -49.4 NC_001664.1 + 152768 0.67 0.994845
Target:  5'- aGAGCGUCgacgGCGaGCGCGAcGGCcgCg -3'
miRNA:   3'- -CUUGUAGa---CGUgUGCGUUuCCGuaGg -5'
4164 3' -49.4 NC_001664.1 + 154598 0.71 0.951143
Target:  5'- gGAGCGUU---GC-CGUAGAGGCGUCCg -3'
miRNA:   3'- -CUUGUAGacgUGuGCGUUUCCGUAGG- -5'
4164 3' -49.4 NC_001664.1 + 155399 0.67 0.996249
Target:  5'- uGACAUCgggguccGCAgACGCGguucccccgGGGGCGUCg -3'
miRNA:   3'- cUUGUAGa------CGUgUGCGU---------UUCCGUAGg -5'
4164 3' -49.4 NC_001664.1 + 156912 1.12 0.007405
Target:  5'- aGAACAUCUGCACACGCAAAGGCAUCCc -3'
miRNA:   3'- -CUUGUAGACGUGUGCGUUUCCGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.