miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4175 5' -59 NC_001664.1 + 6212 0.69 0.593802
Target:  5'- aGACcgUGGGaGaUCCGUGGACgGCGGUUc -3'
miRNA:   3'- aCUGuaGCCC-C-AGGCGUCUG-CGCCAA- -5'
4175 5' -59 NC_001664.1 + 157294 0.69 0.593802
Target:  5'- aGACcgUGGGaGaUCCGUGGACgGCGGUUc -3'
miRNA:   3'- aCUGuaGCCC-C-AGGCGUCUG-CGCCAA- -5'
4175 5' -59 NC_001664.1 + 4358 0.71 0.486875
Target:  5'- cGACGUCGGu-UCCGCAGAaaacacCGCGGUc -3'
miRNA:   3'- aCUGUAGCCccAGGCGUCU------GCGCCAa -5'
4175 5' -59 NC_001664.1 + 155440 0.71 0.486875
Target:  5'- cGACGUCGGu-UCCGCAGAaaacacCGCGGUc -3'
miRNA:   3'- aCUGUAGCCccAGGCGUCU------GCGCCAa -5'
4175 5' -59 NC_001664.1 + 4316 1.05 0.003077
Target:  5'- uUGACAUCGGGGUCCGCAGACGCGGUUc -3'
miRNA:   3'- -ACUGUAGCCCCAGGCGUCUGCGCCAA- -5'
4175 5' -59 NC_001664.1 + 155398 1.05 0.003077
Target:  5'- uUGACAUCGGGGUCCGCAGACGCGGUUc -3'
miRNA:   3'- -ACUGUAGCCCCAGGCGUCUGCGCCAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.