miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4176 3' -57.6 NC_001664.1 + 153036 0.67 0.788284
Target:  5'- --gCGGAGAGAUGgaCGCCucCGGUUgCCa -3'
miRNA:   3'- auaGCCUCUCUGC--GUGGu-GCCGAgGG- -5'
4176 3' -57.6 NC_001664.1 + 1954 0.67 0.788284
Target:  5'- --gCGGAGAGAUGgaCGCCucCGGUUgCCa -3'
miRNA:   3'- auaGCCUCUCUGC--GUGGu-GCCGAgGG- -5'
4176 3' -57.6 NC_001664.1 + 157649 0.67 0.80602
Target:  5'- gUAUCGGAGGcGACgGCuuCUGCGuCUCCCu -3'
miRNA:   3'- -AUAGCCUCU-CUG-CGu-GGUGCcGAGGG- -5'
4176 3' -57.6 NC_001664.1 + 41737 0.67 0.788284
Target:  5'- --cUGGGuGGaAUGCuGCCGCGGUUCCCa -3'
miRNA:   3'- auaGCCUcUC-UGCG-UGGUGCCGAGGG- -5'
4176 3' -57.6 NC_001664.1 + 8312 0.67 0.80602
Target:  5'- ---aGGAGAGAgaaCG-GCCGCGGUcguUCCCg -3'
miRNA:   3'- auagCCUCUCU---GCgUGGUGCCG---AGGG- -5'
4176 3' -57.6 NC_001664.1 + 72001 0.67 0.823144
Target:  5'- cGUCGGGGAGAuacUGUAagaUGCGGUuaaaUCCCa -3'
miRNA:   3'- aUAGCCUCUCU---GCGUg--GUGCCG----AGGG- -5'
4176 3' -57.6 NC_001664.1 + 128247 0.67 0.823144
Target:  5'- cAUCuGAGuaaaAGuuGCACCAUGGCUUCUa -3'
miRNA:   3'- aUAGcCUC----UCugCGUGGUGCCGAGGG- -5'
4176 3' -57.6 NC_001664.1 + 6568 0.67 0.80602
Target:  5'- gUAUCGGAGGcGACgGCuuCUGCGuCUCCCu -3'
miRNA:   3'- -AUAGCCUCU-CUG-CGu-GGUGCcGAGGG- -5'
4176 3' -57.6 NC_001664.1 + 6921 0.69 0.712575
Target:  5'- gUGUCGGccGuGAUGCACCGCcGCUCUa -3'
miRNA:   3'- -AUAGCCu-CuCUGCGUGGUGcCGAGGg -5'
4176 3' -57.6 NC_001664.1 + 158002 0.69 0.712575
Target:  5'- gUGUCGGccGuGAUGCACCGCcGCUCUa -3'
miRNA:   3'- -AUAGCCu-CuCUGCGUGGUGcCGAGGg -5'
4176 3' -57.6 NC_001664.1 + 157616 0.7 0.632592
Target:  5'- -cUCGaGAGAGaACGCcgcacacgaGCCACGG-UCCCa -3'
miRNA:   3'- auAGC-CUCUC-UGCG---------UGGUGCCgAGGG- -5'
4176 3' -57.6 NC_001664.1 + 6535 0.7 0.632592
Target:  5'- -cUCGaGAGAGaACGCcgcacacgaGCCACGG-UCCCa -3'
miRNA:   3'- auAGC-CUCUC-UGCG---------UGGUGCCgAGGG- -5'
4176 3' -57.6 NC_001664.1 + 9539 0.7 0.642674
Target:  5'- aUGUCGGAGGuGGCGaACCucaguuCGGCcCCCa -3'
miRNA:   3'- -AUAGCCUCU-CUGCgUGGu-----GCCGaGGG- -5'
4176 3' -57.6 NC_001664.1 + 145446 0.71 0.602371
Target:  5'- uUGUCGGuGcAGAacCGC-CCGCGGCUCUg -3'
miRNA:   3'- -AUAGCCuC-UCU--GCGuGGUGCCGAGGg -5'
4176 3' -57.6 NC_001664.1 + 155402 0.71 0.582318
Target:  5'- cAUCGGGGuc-CGCAgaCGCGGUUCCCc -3'
miRNA:   3'- aUAGCCUCucuGCGUg-GUGCCGAGGG- -5'
4176 3' -57.6 NC_001664.1 + 4320 0.71 0.582318
Target:  5'- cAUCGGGGuc-CGCAgaCGCGGUUCCCc -3'
miRNA:   3'- aUAGCCUCucuGCGUg-GUGCCGAGGG- -5'
4176 3' -57.6 NC_001664.1 + 8973 0.96 0.017174
Target:  5'- cUAUCGGAGA-ACGCACCACGGCUCCCc -3'
miRNA:   3'- -AUAGCCUCUcUGCGUGGUGCCGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.