Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4176 | 3' | -57.6 | NC_001664.1 | + | 4320 | 0.71 | 0.582318 |
Target: 5'- cAUCGGGGuc-CGCAgaCGCGGUUCCCc -3' miRNA: 3'- aUAGCCUCucuGCGUg-GUGCCGAGGG- -5' |
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4176 | 3' | -57.6 | NC_001664.1 | + | 72001 | 0.67 | 0.823144 |
Target: 5'- cGUCGGGGAGAuacUGUAagaUGCGGUuaaaUCCCa -3' miRNA: 3'- aUAGCCUCUCU---GCGUg--GUGCCG----AGGG- -5' |
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4176 | 3' | -57.6 | NC_001664.1 | + | 8312 | 0.67 | 0.80602 |
Target: 5'- ---aGGAGAGAgaaCG-GCCGCGGUcguUCCCg -3' miRNA: 3'- auagCCUCUCU---GCgUGGUGCCG---AGGG- -5' |
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4176 | 3' | -57.6 | NC_001664.1 | + | 41737 | 0.67 | 0.788284 |
Target: 5'- --cUGGGuGGaAUGCuGCCGCGGUUCCCa -3' miRNA: 3'- auaGCCUcUC-UGCG-UGGUGCCGAGGG- -5' |
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4176 | 3' | -57.6 | NC_001664.1 | + | 158002 | 0.69 | 0.712575 |
Target: 5'- gUGUCGGccGuGAUGCACCGCcGCUCUa -3' miRNA: 3'- -AUAGCCu-CuCUGCGUGGUGcCGAGGg -5' |
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4176 | 3' | -57.6 | NC_001664.1 | + | 6921 | 0.69 | 0.712575 |
Target: 5'- gUGUCGGccGuGAUGCACCGCcGCUCUa -3' miRNA: 3'- -AUAGCCu-CuCUGCGUGGUGcCGAGGg -5' |
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4176 | 3' | -57.6 | NC_001664.1 | + | 9539 | 0.7 | 0.642674 |
Target: 5'- aUGUCGGAGGuGGCGaACCucaguuCGGCcCCCa -3' miRNA: 3'- -AUAGCCUCU-CUGCgUGGu-----GCCGaGGG- -5' |
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4176 | 3' | -57.6 | NC_001664.1 | + | 145446 | 0.71 | 0.602371 |
Target: 5'- uUGUCGGuGcAGAacCGC-CCGCGGCUCUg -3' miRNA: 3'- -AUAGCCuC-UCU--GCGuGGUGCCGAGGg -5' |
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4176 | 3' | -57.6 | NC_001664.1 | + | 155402 | 0.71 | 0.582318 |
Target: 5'- cAUCGGGGuc-CGCAgaCGCGGUUCCCc -3' miRNA: 3'- aUAGCCUCucuGCGUg-GUGCCGAGGG- -5' |
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4176 | 3' | -57.6 | NC_001664.1 | + | 8973 | 0.96 | 0.017174 |
Target: 5'- cUAUCGGAGA-ACGCACCACGGCUCCCc -3' miRNA: 3'- -AUAGCCUCUcUGCGUGGUGCCGAGGG- -5' |
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4176 | 3' | -57.6 | NC_001664.1 | + | 128247 | 0.67 | 0.823144 |
Target: 5'- cAUCuGAGuaaaAGuuGCACCAUGGCUUCUa -3' miRNA: 3'- aUAGcCUC----UCugCGUGGUGCCGAGGG- -5' |
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4176 | 3' | -57.6 | NC_001664.1 | + | 6568 | 0.67 | 0.80602 |
Target: 5'- gUAUCGGAGGcGACgGCuuCUGCGuCUCCCu -3' miRNA: 3'- -AUAGCCUCU-CUG-CGu-GGUGCcGAGGG- -5' |
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4176 | 3' | -57.6 | NC_001664.1 | + | 157649 | 0.67 | 0.80602 |
Target: 5'- gUAUCGGAGGcGACgGCuuCUGCGuCUCCCu -3' miRNA: 3'- -AUAGCCUCU-CUG-CGu-GGUGCcGAGGG- -5' |
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4176 | 3' | -57.6 | NC_001664.1 | + | 1954 | 0.67 | 0.788284 |
Target: 5'- --gCGGAGAGAUGgaCGCCucCGGUUgCCa -3' miRNA: 3'- auaGCCUCUCUGC--GUGGu-GCCGAgGG- -5' |
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4176 | 3' | -57.6 | NC_001664.1 | + | 153036 | 0.67 | 0.788284 |
Target: 5'- --gCGGAGAGAUGgaCGCCucCGGUUgCCa -3' miRNA: 3'- auaGCCUCUCUGC--GUGGu-GCCGAgGG- -5' |
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4176 | 3' | -57.6 | NC_001664.1 | + | 6535 | 0.7 | 0.632592 |
Target: 5'- -cUCGaGAGAGaACGCcgcacacgaGCCACGG-UCCCa -3' miRNA: 3'- auAGC-CUCUC-UGCG---------UGGUGCCgAGGG- -5' |
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4176 | 3' | -57.6 | NC_001664.1 | + | 157616 | 0.7 | 0.632592 |
Target: 5'- -cUCGaGAGAGaACGCcgcacacgaGCCACGG-UCCCa -3' miRNA: 3'- auAGC-CUCUC-UGCG---------UGGUGCCgAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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