miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
418 3' -59.7 AC_000011.1 + 9168 0.66 0.379748
Target:  5'- gGAuGAGCUCGgcgaugguggcgcgcACCUCGcGCUcgaaggCCCCCg -3'
miRNA:   3'- aCUcCUCGAGU---------------UGGGGC-CGAa-----GGGGG- -5'
418 3' -59.7 AC_000011.1 + 22769 0.66 0.37621
Target:  5'- cGAGGAGC---ACCgCGGCaUUCCgCUg -3'
miRNA:   3'- aCUCCUCGaguUGGgGCCG-AAGGgGG- -5'
418 3' -59.7 AC_000011.1 + 21418 0.66 0.37621
Target:  5'- cGAGGAccGCUgCGucACCCUGGaaaagUCCaCCCa -3'
miRNA:   3'- aCUCCU--CGA-GU--UGGGGCCga---AGG-GGG- -5'
418 3' -59.7 AC_000011.1 + 26442 0.66 0.37621
Target:  5'- aUGuGGAGCUacCAGCCCCagaugGGCcuggCCgCCg -3'
miRNA:   3'- -ACuCCUCGA--GUUGGGG-----CCGaa--GGgGG- -5'
418 3' -59.7 AC_000011.1 + 22993 0.66 0.358859
Target:  5'- gGGGGuAGCUgaAGCCCaCGGCcgccagcUCCUCCu -3'
miRNA:   3'- aCUCC-UCGAg-UUGGG-GCCGa------AGGGGG- -5'
418 3' -59.7 AC_000011.1 + 21135 0.68 0.298141
Target:  5'- aGcAGGAGCUCAgggccaucauccgcgACCUgGGCUgcgggCCCUa -3'
miRNA:   3'- aC-UCCUCGAGU---------------UGGGgCCGAa----GGGGg -5'
418 3' -59.7 AC_000011.1 + 23001 0.68 0.295177
Target:  5'- aGcGGAGCUUugaGACCCUGGaCgagagcgaCCCCCu -3'
miRNA:   3'- aCuCCUCGAG---UUGGGGCC-Gaa------GGGGG- -5'
418 3' -59.7 AC_000011.1 + 6464 0.68 0.27367
Target:  5'- cGAGGucauGCUgGACCCCcuGC--CCCCCu -3'
miRNA:   3'- aCUCCu---CGAgUUGGGGc-CGaaGGGGG- -5'
418 3' -59.7 AC_000011.1 + 23777 0.68 0.269523
Target:  5'- gGAGGAGCUCAGCCgCGcCUacgaguugaaccucuUCUCgCCg -3'
miRNA:   3'- aCUCCUCGAGUUGGgGCcGA---------------AGGG-GG- -5'
418 3' -59.7 AC_000011.1 + 20308 0.69 0.236913
Target:  5'- cUGGGcuccGGGUUCGACCCCuacuucgucuacucgGGCUccaUCCCCUa -3'
miRNA:   3'- -ACUC----CUCGAGUUGGGG---------------CCGA---AGGGGG- -5'
418 3' -59.7 AC_000011.1 + 7525 0.69 0.23384
Target:  5'- cGAGGAGCUCAagaaacuGCCCCacgucaagGGCcgUCCgCg -3'
miRNA:   3'- aCUCCUCGAGU-------UGGGG--------CCGa-AGGgGg -5'
418 3' -59.7 AC_000011.1 + 7718 0.72 0.140358
Target:  5'- aGGGcGAGCUCGACgagCCGGUcgUCCCCg -3'
miRNA:   3'- aCUC-CUCGAGUUGg--GGCCGa-AGGGGg -5'
418 3' -59.7 AC_000011.1 + 3509 0.72 0.136514
Target:  5'- gGAGGGGUauUCAGCCCUuaucugacggGGCgucUCCCCUc -3'
miRNA:   3'- aCUCCUCG--AGUUGGGG----------CCGa--AGGGGG- -5'
418 3' -59.7 AC_000011.1 + 26980 0.73 0.129114
Target:  5'- gGAGGAGUUCAcucccucggucuACUucaaccccuucuCCGGC-UCCCCCg -3'
miRNA:   3'- aCUCCUCGAGU------------UGG------------GGCCGaAGGGGG- -5'
418 3' -59.7 AC_000011.1 + 23063 0.73 0.128754
Target:  5'- gGAGGAGCUggCGGCCgUgGGCUUcagcuacCCCCCg -3'
miRNA:   3'- aCUCCUCGA--GUUGG-GgCCGAA-------GGGGG- -5'
418 3' -59.7 AC_000011.1 + 10245 0.73 0.115416
Target:  5'- cGAGGAcCUC-GCgCCCGGCg-CCCCCg -3'
miRNA:   3'- aCUCCUcGAGuUG-GGGCCGaaGGGGG- -5'
418 3' -59.7 AC_000011.1 + 13683 0.74 0.109086
Target:  5'- cGGGcGGCgcuGCCCCGGCUcguggCCCCCu -3'
miRNA:   3'- aCUCcUCGaguUGGGGCCGAa----GGGGG- -5'
418 3' -59.7 AC_000011.1 + 25469 1.12 0.000129
Target:  5'- gUGAGGAGCUCAACCCCGGCUUCCCCCa -3'
miRNA:   3'- -ACUCCUCGAGUUGGGGCCGAAGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.