Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
4184 | 3' | -57.8 | NC_001664.1 | + | 151191 | 0.66 | 0.895619 |
Target: 5'- cCUGGCGCGGucUGAccuCGCGccgcGGGGCGa -3' miRNA: 3'- -GGCUGUGCCc-ACU---GCGCauu-CCCCGC- -5' |
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4184 | 3' | -57.8 | NC_001664.1 | + | 149061 | 0.66 | 0.882512 |
Target: 5'- uUGAUACGuaUG-CGCGUAcAGGGGUGu -3' miRNA: 3'- gGCUGUGCccACuGCGCAU-UCCCCGC- -5' |
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4184 | 3' | -57.8 | NC_001664.1 | + | 155218 | 0.67 | 0.838365 |
Target: 5'- aCGAgG-GGGUGcguccuauaggcGCGCGUggGAGGGGCc -3' miRNA: 3'- gGCUgUgCCCAC------------UGCGCA--UUCCCCGc -5' |
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4184 | 3' | -57.8 | NC_001664.1 | + | 4136 | 0.67 | 0.838365 |
Target: 5'- aCGAgG-GGGUGcguccuauaggcGCGCGUggGAGGGGCc -3' miRNA: 3'- gGCUgUgCCCAC------------UGCGCA--UUCCCCGc -5' |
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4184 | 3' | -57.8 | NC_001664.1 | + | 8165 | 0.67 | 0.830359 |
Target: 5'- cCCGAaagaGCGGacGACG-GUAuAGGGGCGg -3' miRNA: 3'- -GGCUg---UGCCcaCUGCgCAU-UCCCCGC- -5' |
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4184 | 3' | -57.8 | NC_001664.1 | + | 2451 | 0.7 | 0.694351 |
Target: 5'- aCGACggGCGGGgcgGACGgggacgacaCGUGGGGGGUu -3' miRNA: 3'- gGCUG--UGCCCa--CUGC---------GCAUUCCCCGc -5' |
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4184 | 3' | -57.8 | NC_001664.1 | + | 153532 | 0.7 | 0.694351 |
Target: 5'- aCGACggGCGGGgcgGACGgggacgacaCGUGGGGGGUu -3' miRNA: 3'- gGCUG--UGCCCa--CUGC---------GCAUUCCCCGc -5' |
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4184 | 3' | -57.8 | NC_001664.1 | + | 151666 | 0.7 | 0.684588 |
Target: 5'- gCGGCAgGgGGUGAUgGUGUgaaaGAGGGGCa -3' miRNA: 3'- gGCUGUgC-CCACUG-CGCA----UUCCCCGc -5' |
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4184 | 3' | -57.8 | NC_001664.1 | + | 585 | 0.7 | 0.684588 |
Target: 5'- gCGGCAgGgGGUGAUgGUGUgaaaGAGGGGCa -3' miRNA: 3'- gGCUGUgC-CCACUG-CGCA----UUCCCCGc -5' |
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4184 | 3' | -57.8 | NC_001664.1 | + | 155398 | 0.7 | 0.674784 |
Target: 5'- uUGACAuCGGGguccgcaGACGCGguucccccGGGGGCGu -3' miRNA: 3'- gGCUGU-GCCCa------CUGCGCau------UCCCCGC- -5' |
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4184 | 3' | -57.8 | NC_001664.1 | + | 4316 | 0.7 | 0.674784 |
Target: 5'- uUGACAuCGGGguccgcaGACGCGguucccccGGGGGCGu -3' miRNA: 3'- gGCUGU-GCCCa------CUGCGCau------UCCCCGC- -5' |
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4184 | 3' | -57.8 | NC_001664.1 | + | 2508 | 0.72 | 0.54704 |
Target: 5'- aCGGCGgGGG-GACggGCGgagcgGAGGGGCGc -3' miRNA: 3'- gGCUGUgCCCaCUG--CGCa----UUCCCCGC- -5' |
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4184 | 3' | -57.8 | NC_001664.1 | + | 153589 | 0.72 | 0.54704 |
Target: 5'- aCGGCGgGGG-GACggGCGgagcgGAGGGGCGc -3' miRNA: 3'- gGCUGUgCCCaCUG--CGCa----UUCCCCGC- -5' |
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4184 | 3' | -57.8 | NC_001664.1 | + | 152821 | 1.1 | 0.002443 |
Target: 5'- uCCGACACGGGUGACGCGUAAGGGGCGu -3' miRNA: 3'- -GGCUGUGCCCACUGCGCAUUCCCCGC- -5' |
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4184 | 3' | -57.8 | NC_001664.1 | + | 1740 | 1.1 | 0.002443 |
Target: 5'- uCCGACACGGGUGACGCGUAAGGGGCGu -3' miRNA: 3'- -GGCUGUGCCCACUGCGCAUUCCCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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