miRNA display CGI


Results 21 - 39 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4185 5' -53.1 NC_001664.1 + 131401 0.71 0.840251
Target:  5'- cGCGCACaGAC-ACGCGCaCAGACAa--- -3'
miRNA:   3'- -UGCGUG-CUGuUGUGCG-GUCUGUagcu -5'
4185 5' -53.1 NC_001664.1 + 131230 0.71 0.823345
Target:  5'- cGCGCACaGAC-ACACGCaCAGACAcaGAc -3'
miRNA:   3'- -UGCGUG-CUGuUGUGCG-GUCUGUagCU- -5'
4185 5' -53.1 NC_001664.1 + 131336 0.71 0.823345
Target:  5'- cGCGCACaGACAcagacACGCGCaCAGACA-CGu -3'
miRNA:   3'- -UGCGUG-CUGU-----UGUGCG-GUCUGUaGCu -5'
4185 5' -53.1 NC_001664.1 + 131272 0.71 0.805725
Target:  5'- cGCGCACaGAC-ACGCGCaCAGACA-CGu -3'
miRNA:   3'- -UGCGUG-CUGuUGUGCG-GUCUGUaGCu -5'
4185 5' -53.1 NC_001664.1 + 131122 0.72 0.796669
Target:  5'- cACGCACaGAC-ACACGCaCAGACA-CGu -3'
miRNA:   3'- -UGCGUG-CUGuUGUGCG-GUCUGUaGCu -5'
4185 5' -53.1 NC_001664.1 + 156038 0.68 0.931194
Target:  5'- uCGCGCGugGGCcagucucgccucguuGCGCCGGAC--CGAg -3'
miRNA:   3'- uGCGUGCugUUG---------------UGCGGUCUGuaGCU- -5'
4185 5' -53.1 NC_001664.1 + 4956 0.68 0.931194
Target:  5'- uCGCGCGugGGCcagucucgccucguuGCGCCGGAC--CGAg -3'
miRNA:   3'- uGCGUGCugUUG---------------UGCGGUCUGuaGCU- -5'
4185 5' -53.1 NC_001664.1 + 154826 0.67 0.959843
Target:  5'- uCGUACGGCGAUgaucucgGCGCCGGugGUa-- -3'
miRNA:   3'- uGCGUGCUGUUG-------UGCGGUCugUAgcu -5'
4185 5' -53.1 NC_001664.1 + 10705 0.66 0.978038
Target:  5'- cAUGUGCGACGAgGCGCggcgCAGGCucgCGGa -3'
miRNA:   3'- -UGCGUGCUGUUgUGCG----GUCUGua-GCU- -5'
4185 5' -53.1 NC_001664.1 + 131305 0.66 0.978038
Target:  5'- gUGCACaGACAgacACGCGCaCAGACAcaGAc -3'
miRNA:   3'- uGCGUG-CUGU---UGUGCG-GUCUGUagCU- -5'
4185 5' -53.1 NC_001664.1 + 10607 0.66 0.975578
Target:  5'- -gGC-CGACGACG-GCCAGAUuuUCGGa -3'
miRNA:   3'- ugCGuGCUGUUGUgCGGUCUGu-AGCU- -5'
4185 5' -53.1 NC_001664.1 + 2821 0.66 0.972646
Target:  5'- uCGCGCGGCGucuCACGCCGugugugcGGCGggCGGc -3'
miRNA:   3'- uGCGUGCUGUu--GUGCGGU-------CUGUa-GCU- -5'
4185 5' -53.1 NC_001664.1 + 153903 0.66 0.972646
Target:  5'- uCGCGCGGCGucuCACGCCGugugugcGGCGggCGGc -3'
miRNA:   3'- uGCGUGCUGUu--GUGCGGU-------CUGUa-GCU- -5'
4185 5' -53.1 NC_001664.1 + 33817 0.67 0.966995
Target:  5'- uCGCugGACuuaguGgACGCUAGugAUCa- -3'
miRNA:   3'- uGCGugCUGu----UgUGCGGUCugUAGcu -5'
4185 5' -53.1 NC_001664.1 + 6300 0.67 0.963711
Target:  5'- gGCGgcCGCGGCGAuCACGUcgaaCAGAUGUCGGg -3'
miRNA:   3'- -UGC--GUGCUGUU-GUGCG----GUCUGUAGCU- -5'
4185 5' -53.1 NC_001664.1 + 157381 0.67 0.963711
Target:  5'- gGCGgcCGCGGCGAuCACGUcgaaCAGAUGUCGGg -3'
miRNA:   3'- -UGC--GUGCUGUU-GUGCG----GUCUGUAGCU- -5'
4185 5' -53.1 NC_001664.1 + 11792 0.67 0.960206
Target:  5'- uGCGCgGCGGCGGCuCGUuuGACAUCa- -3'
miRNA:   3'- -UGCG-UGCUGUUGuGCGguCUGUAGcu -5'
4185 5' -53.1 NC_001664.1 + 3744 0.67 0.959843
Target:  5'- uCGUACGGCGAUgaucucgGCGCCGGugGUa-- -3'
miRNA:   3'- uGCGUGCUGUUG-------UGCGGUCugUAgcu -5'
4185 5' -53.1 NC_001664.1 + 86357 0.74 0.668456
Target:  5'- -aGCACGguuGCAAacuuaACGCCAGACAUCa- -3'
miRNA:   3'- ugCGUGC---UGUUg----UGCGGUCUGUAGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.