miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4185 5' -53.1 NC_001664.1 + 131122 0.72 0.796669
Target:  5'- cACGCACaGAC-ACACGCaCAGACA-CGu -3'
miRNA:   3'- -UGCGUG-CUGuUGUGCG-GUCUGUaGCu -5'
4185 5' -53.1 NC_001664.1 + 131200 0.7 0.848416
Target:  5'- cACGCACaGAC-ACACGCaCAGACAcaGAc -3'
miRNA:   3'- -UGCGUG-CUGuUGUGCG-GUCUGUagCU- -5'
4185 5' -53.1 NC_001664.1 + 131230 0.71 0.823345
Target:  5'- cGCGCACaGAC-ACACGCaCAGACAcaGAc -3'
miRNA:   3'- -UGCGUG-CUGuUGUGCG-GUCUGUagCU- -5'
4185 5' -53.1 NC_001664.1 + 131272 0.71 0.805725
Target:  5'- cGCGCACaGAC-ACGCGCaCAGACA-CGu -3'
miRNA:   3'- -UGCGUG-CUGuUGUGCG-GUCUGUaGCu -5'
4185 5' -53.1 NC_001664.1 + 131305 0.66 0.978038
Target:  5'- gUGCACaGACAgacACGCGCaCAGACAcaGAc -3'
miRNA:   3'- uGCGUG-CUGU---UGUGCG-GUCUGUagCU- -5'
4185 5' -53.1 NC_001664.1 + 131336 0.71 0.823345
Target:  5'- cGCGCACaGACAcagacACGCGCaCAGACA-CGu -3'
miRNA:   3'- -UGCGUG-CUGU-----UGUGCG-GUCUGUaGCu -5'
4185 5' -53.1 NC_001664.1 + 131372 0.7 0.871674
Target:  5'- cGCGCACaGACAcagacACGCGCaCAGACAcaGAc -3'
miRNA:   3'- -UGCGUG-CUGU-----UGUGCG-GUCUGUagCU- -5'
4185 5' -53.1 NC_001664.1 + 131401 0.71 0.840251
Target:  5'- cGCGCACaGAC-ACGCGCaCAGACAa--- -3'
miRNA:   3'- -UGCGUG-CUGuUGUGCG-GUCUGUagcu -5'
4185 5' -53.1 NC_001664.1 + 148707 0.67 0.952509
Target:  5'- aACGUACGACGAcCAUGCUgcACGUCu- -3'
miRNA:   3'- -UGCGUGCUGUU-GUGCGGucUGUAGcu -5'
4185 5' -53.1 NC_001664.1 + 152003 0.67 0.960206
Target:  5'- cACGCGCGugucggcuACGACACGCUGGAgCAgcuuccacgCGAc -3'
miRNA:   3'- -UGCGUGC--------UGUUGUGCGGUCU-GUa--------GCU- -5'
4185 5' -53.1 NC_001664.1 + 152783 0.71 0.805725
Target:  5'- -aGCGCGACGGC-CGC--GACGUCGAc -3'
miRNA:   3'- ugCGUGCUGUUGuGCGguCUGUAGCU- -5'
4185 5' -53.1 NC_001664.1 + 153154 0.66 0.977801
Target:  5'- gACGUACGGCGGCAgagGCC-GACAugauuccugcccgUCGAu -3'
miRNA:   3'- -UGCGUGCUGUUGUg--CGGuCUGU-------------AGCU- -5'
4185 5' -53.1 NC_001664.1 + 153903 0.66 0.972646
Target:  5'- uCGCGCGGCGucuCACGCCGugugugcGGCGggCGGc -3'
miRNA:   3'- uGCGUGCUGUu--GUGCGGU-------CUGUa-GCU- -5'
4185 5' -53.1 NC_001664.1 + 154035 1.09 0.006312
Target:  5'- cACGCACGACAACACGCCAGACAUCGAc -3'
miRNA:   3'- -UGCGUGCUGUUGUGCGGUCUGUAGCU- -5'
4185 5' -53.1 NC_001664.1 + 154826 0.67 0.959843
Target:  5'- uCGUACGGCGAUgaucucgGCGCCGGugGUa-- -3'
miRNA:   3'- uGCGUGCUGUUG-------UGCGGUCugUAgcu -5'
4185 5' -53.1 NC_001664.1 + 155198 0.7 0.848416
Target:  5'- gGCGCGCGugGGagGgGCCGGACGUauaCGAa -3'
miRNA:   3'- -UGCGUGCugUUg-UgCGGUCUGUA---GCU- -5'
4185 5' -53.1 NC_001664.1 + 155377 0.7 0.886087
Target:  5'- gACaCGCGACAcAUugGCCcguuGACAUCGGg -3'
miRNA:   3'- -UGcGUGCUGU-UGugCGGu---CUGUAGCU- -5'
4185 5' -53.1 NC_001664.1 + 156038 0.68 0.931194
Target:  5'- uCGCGCGugGGCcagucucgccucguuGCGCCGGAC--CGAg -3'
miRNA:   3'- uGCGUGCugUUG---------------UGCGGUCUGuaGCU- -5'
4185 5' -53.1 NC_001664.1 + 157381 0.67 0.963711
Target:  5'- gGCGgcCGCGGCGAuCACGUcgaaCAGAUGUCGGg -3'
miRNA:   3'- -UGC--GUGCUGUU-GUGCG----GUCUGUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.