Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4189 | 3' | -52.7 | NC_001664.1 | + | 155055 | 1.1 | 0.005407 |
Target: 5'- cUCGUUGCGAAACCGCAACAGGGCACAg -3' miRNA: 3'- -AGCAACGCUUUGGCGUUGUCCCGUGU- -5' |
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4189 | 3' | -52.7 | NC_001664.1 | + | 3974 | 0.99 | 0.026376 |
Target: 5'- cUCGUUGCGAAACCGCAAC-GGGCACAg -3' miRNA: 3'- -AGCAACGCUUUGGCGUUGuCCCGUGU- -5' |
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4189 | 3' | -52.7 | NC_001664.1 | + | 4152 | 0.73 | 0.734117 |
Target: 5'- cUGUUGCGGuuUCGCAACgagGGGGUGCGu -3' miRNA: 3'- aGCAACGCUuuGGCGUUG---UCCCGUGU- -5' |
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4189 | 3' | -52.7 | NC_001664.1 | + | 155234 | 0.73 | 0.734117 |
Target: 5'- cUGUUGCGGuuUCGCAACgagGGGGUGCGu -3' miRNA: 3'- aGCAACGCUuuGGCGUUG---UCCCGUGU- -5' |
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4189 | 3' | -52.7 | NC_001664.1 | + | 150922 | 0.73 | 0.753987 |
Target: 5'- gCGUUGUGugauaaguGCUGCAAC-GGGCGCGg -3' miRNA: 3'- aGCAACGCuu------UGGCGUUGuCCCGUGU- -5' |
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4189 | 3' | -52.7 | NC_001664.1 | + | 151007 | 0.71 | 0.845047 |
Target: 5'- gCGgcGCGAggucaGACCGCGcCAGGGC-CGg -3' miRNA: 3'- aGCaaCGCU-----UUGGCGUuGUCCCGuGU- -5' |
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4189 | 3' | -52.7 | NC_001664.1 | + | 9357 | 0.7 | 0.868798 |
Target: 5'- cCGUUGCcuuGGCCGCG-CGGGGCu-- -3' miRNA: 3'- aGCAACGcu-UUGGCGUuGUCCCGugu -5' |
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4189 | 3' | -52.7 | NC_001664.1 | + | 1560 | 0.69 | 0.910152 |
Target: 5'- ----cGCGAAGuguuCCGCGACGcuGGGCGCGu -3' miRNA: 3'- agcaaCGCUUU----GGCGUUGU--CCCGUGU- -5' |
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4189 | 3' | -52.7 | NC_001664.1 | + | 152641 | 0.69 | 0.910152 |
Target: 5'- ----cGCGAAGuguuCCGCGACGcuGGGCGCGu -3' miRNA: 3'- agcaaCGCUUU----GGCGUUGU--CCCGUGU- -5' |
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4189 | 3' | -52.7 | NC_001664.1 | + | 4229 | 0.68 | 0.942665 |
Target: 5'- cUCGgcuuUGCc--GCCGCGGCAGGGUcuGCGc -3' miRNA: 3'- -AGCa---ACGcuuUGGCGUUGUCCCG--UGU- -5' |
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4189 | 3' | -52.7 | NC_001664.1 | + | 155311 | 0.68 | 0.942665 |
Target: 5'- cUCGgcuuUGCc--GCCGCGGCAGGGUcuGCGc -3' miRNA: 3'- -AGCa---ACGcuuUGGCGUUGUCCCG--UGU- -5' |
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4189 | 3' | -52.7 | NC_001664.1 | + | 8583 | 0.66 | 0.974876 |
Target: 5'- aUGUcUGCGGAaaggucaACCGCccGGCGGGGCGu- -3' miRNA: 3'- aGCA-ACGCUU-------UGGCG--UUGUCCCGUgu -5' |
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4189 | 3' | -52.7 | NC_001664.1 | + | 8271 | 0.66 | 0.98212 |
Target: 5'- aCGggagGCaGAGCCGCAG-AGGGCAg- -3' miRNA: 3'- aGCaa--CGcUUUGGCGUUgUCCCGUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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