miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4189 3' -52.7 NC_001664.1 + 155055 1.1 0.005407
Target:  5'- cUCGUUGCGAAACCGCAACAGGGCACAg -3'
miRNA:   3'- -AGCAACGCUUUGGCGUUGUCCCGUGU- -5'
4189 3' -52.7 NC_001664.1 + 3974 0.99 0.026376
Target:  5'- cUCGUUGCGAAACCGCAAC-GGGCACAg -3'
miRNA:   3'- -AGCAACGCUUUGGCGUUGuCCCGUGU- -5'
4189 3' -52.7 NC_001664.1 + 151007 0.71 0.845047
Target:  5'- gCGgcGCGAggucaGACCGCGcCAGGGC-CGg -3'
miRNA:   3'- aGCaaCGCU-----UUGGCGUuGUCCCGuGU- -5'
4189 3' -52.7 NC_001664.1 + 8271 0.66 0.98212
Target:  5'- aCGggagGCaGAGCCGCAG-AGGGCAg- -3'
miRNA:   3'- aGCaa--CGcUUUGGCGUUgUCCCGUgu -5'
4189 3' -52.7 NC_001664.1 + 8583 0.66 0.974876
Target:  5'- aUGUcUGCGGAaaggucaACCGCccGGCGGGGCGu- -3'
miRNA:   3'- aGCA-ACGCUU-------UGGCG--UUGUCCCGUgu -5'
4189 3' -52.7 NC_001664.1 + 4229 0.68 0.942665
Target:  5'- cUCGgcuuUGCc--GCCGCGGCAGGGUcuGCGc -3'
miRNA:   3'- -AGCa---ACGcuuUGGCGUUGUCCCG--UGU- -5'
4189 3' -52.7 NC_001664.1 + 155311 0.68 0.942665
Target:  5'- cUCGgcuuUGCc--GCCGCGGCAGGGUcuGCGc -3'
miRNA:   3'- -AGCa---ACGcuuUGGCGUUGUCCCG--UGU- -5'
4189 3' -52.7 NC_001664.1 + 1560 0.69 0.910152
Target:  5'- ----cGCGAAGuguuCCGCGACGcuGGGCGCGu -3'
miRNA:   3'- agcaaCGCUUU----GGCGUUGU--CCCGUGU- -5'
4189 3' -52.7 NC_001664.1 + 152641 0.69 0.910152
Target:  5'- ----cGCGAAGuguuCCGCGACGcuGGGCGCGu -3'
miRNA:   3'- agcaaCGCUUU----GGCGUUGU--CCCGUGU- -5'
4189 3' -52.7 NC_001664.1 + 9357 0.7 0.868798
Target:  5'- cCGUUGCcuuGGCCGCG-CGGGGCu-- -3'
miRNA:   3'- aGCAACGcu-UUGGCGUuGUCCCGugu -5'
4189 3' -52.7 NC_001664.1 + 150922 0.73 0.753987
Target:  5'- gCGUUGUGugauaaguGCUGCAAC-GGGCGCGg -3'
miRNA:   3'- aGCAACGCuu------UGGCGUUGuCCCGUGU- -5'
4189 3' -52.7 NC_001664.1 + 4152 0.73 0.734117
Target:  5'- cUGUUGCGGuuUCGCAACgagGGGGUGCGu -3'
miRNA:   3'- aGCAACGCUuuGGCGUUG---UCCCGUGU- -5'
4189 3' -52.7 NC_001664.1 + 155234 0.73 0.734117
Target:  5'- cUGUUGCGGuuUCGCAACgagGGGGUGCGu -3'
miRNA:   3'- aGCAACGCUuuGGCGUUG---UCCCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.