miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
423 3' -53.9 AC_000011.1 + 21904 0.67 0.560049
Target:  5'- cAGCAGUuuGgGCAGCgGGGUGUcggggaAGGAGUCg -3'
miRNA:   3'- -UCGUCG--UgUGUUG-UCCGCG------UUCUCAG- -5'
423 3' -53.9 AC_000011.1 + 16276 0.67 0.560049
Target:  5'- cGGCGGCGCguGCAguggcGCGGGCGgAAG-GUg -3'
miRNA:   3'- -UCGUCGUG--UGU-----UGUCCGCgUUCuCAg -5'
423 3' -53.9 AC_000011.1 + 10144 0.66 0.606377
Target:  5'- uGCGGCG-GCGGCuGGCGguAGAG-Cg -3'
miRNA:   3'- uCGUCGUgUGUUGuCCGCguUCUCaG- -5'
423 3' -53.9 AC_000011.1 + 6691 0.66 0.606377
Target:  5'- cGUAGuCAUACAGCucGUGCGAGGGg- -3'
miRNA:   3'- uCGUC-GUGUGUUGucCGCGUUCUCag -5'
423 3' -53.9 AC_000011.1 + 12578 0.66 0.618047
Target:  5'- gGGCaccucGGCAC-CAuCAGGCGCAGGGc-- -3'
miRNA:   3'- -UCG-----UCGUGuGUuGUCCGCGUUCUcag -5'
423 3' -53.9 AC_000011.1 + 16954 0.66 0.628563
Target:  5'- uGCAGCGCGuaguugggcauCAGCAGGCuggccGCGccguacuugcgccGGGGUCu -3'
miRNA:   3'- uCGUCGUGU-----------GUUGUCCG-----CGU-------------UCUCAG- -5'
423 3' -53.9 AC_000011.1 + 30613 0.66 0.641419
Target:  5'- gGGCAGCcggagcCGCuuCAGGUGgaaGGGGGUCu -3'
miRNA:   3'- -UCGUCGu-----GUGuuGUCCGCg--UUCUCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.