Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
423 | 3' | -53.9 | AC_000011.1 | + | 21904 | 0.67 | 0.560049 |
Target: 5'- cAGCAGUuuGgGCAGCgGGGUGUcggggaAGGAGUCg -3' miRNA: 3'- -UCGUCG--UgUGUUG-UCCGCG------UUCUCAG- -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 16276 | 0.67 | 0.560049 |
Target: 5'- cGGCGGCGCguGCAguggcGCGGGCGgAAG-GUg -3' miRNA: 3'- -UCGUCGUG--UGU-----UGUCCGCgUUCuCAg -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 10144 | 0.66 | 0.606377 |
Target: 5'- uGCGGCG-GCGGCuGGCGguAGAG-Cg -3' miRNA: 3'- uCGUCGUgUGUUGuCCGCguUCUCaG- -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 6691 | 0.66 | 0.606377 |
Target: 5'- cGUAGuCAUACAGCucGUGCGAGGGg- -3' miRNA: 3'- uCGUC-GUGUGUUGucCGCGUUCUCag -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 12578 | 0.66 | 0.618047 |
Target: 5'- gGGCaccucGGCAC-CAuCAGGCGCAGGGc-- -3' miRNA: 3'- -UCG-----UCGUGuGUuGUCCGCGUUCUcag -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 16954 | 0.66 | 0.628563 |
Target: 5'- uGCAGCGCGuaguugggcauCAGCAGGCuggccGCGccguacuugcgccGGGGUCu -3' miRNA: 3'- uCGUCGUGU-----------GUUGUCCG-----CGU-------------UCUCAG- -5' |
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423 | 3' | -53.9 | AC_000011.1 | + | 30613 | 0.66 | 0.641419 |
Target: 5'- gGGCAGCcggagcCGCuuCAGGUGgaaGGGGGUCu -3' miRNA: 3'- -UCGUCGu-----GUGuuGUCCGCg--UUCUCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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