miRNA display CGI


Results 41 - 60 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4291 3' -58.5 NC_001716.2 + 8916 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 9665 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 151818 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 152568 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 152418 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 152352 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 152310 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 152214 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 152058 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 152034 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 151974 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 151908 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 977 0.7 0.524585
Target:  5'- aGGGcUAGGGUUAGGGCUaaGGCUa-- -3'
miRNA:   3'- -CCCaAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 147 0.71 0.495587
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUCa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 9845 0.71 0.495587
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUCa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 143050 0.71 0.495587
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUCa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 152676 0.71 0.495587
Target:  5'- aGGGUUAGGGUUAGGGUua-GGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 152747 0.71 0.495587
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUCa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 150531 0.71 0.476664
Target:  5'- aGGGUUAGGGUUGGGGU--UAGgCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 7628 0.71 0.476664
Target:  5'- aGGGUUAGGGUUGGGGU--UAGgCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.