miRNA display CGI


Results 21 - 40 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4291 3' -58.5 NC_001716.2 + 152634 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 152478 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 152376 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 152280 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 152130 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 152106 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 152082 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 151932 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 151878 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 148972 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUugGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 148900 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUugGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 148870 0.69 0.635044
Target:  5'- aGGGUUAGGGUUGGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 151974 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 152034 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 152058 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 152214 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 152310 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 152352 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 152418 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4291 3' -58.5 NC_001716.2 + 151908 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.