miRNA display CGI


Results 21 - 40 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4291 3' -58.5 NC_001716.2 + 719 1 0.006544
Target:  5'- aGGGUUAGGGUuagguuUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCA------AUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 769 1.02 0.004832
Target:  5'- aGGGcUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCaAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 831 1.02 0.004832
Target:  5'- aGGGcUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCaAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 881 0.66 0.773414
Target:  5'- aGGGUUAGGGUUAGGGUUaaacuuagAGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcg------UCGGgau -5'
4291 3' -58.5 NC_001716.2 + 977 0.7 0.524585
Target:  5'- aGGGcUAGGGUUAGGGCUaaGGCUa-- -3'
miRNA:   3'- -CCCaAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 5932 0.8 0.146149
Target:  5'- aGGGUUAGGGUUAGGGCUGgGGUuagaCUGa -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCgUCGg---GAU- -5'
4291 3' -58.5 NC_001716.2 + 5997 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUugGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 6033 0.75 0.310929
Target:  5'- aGGGUUAGGGUUGGGGuuGgGGUgaaaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCG----GGAU- -5'
4291 3' -58.5 NC_001716.2 + 6069 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUugGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 6105 0.75 0.290189
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUgaaaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCG----GGAU- -5'
4291 3' -58.5 NC_001716.2 + 6141 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 6177 0.8 0.146149
Target:  5'- aGGGUUAGGGUUAGGGCUGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 6213 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 6249 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 6285 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 6321 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 6363 0.8 0.146149
Target:  5'- aGGGUUAGGGUUAGGGCUGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 6399 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 6435 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 6471 0.75 0.290189
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUgaaaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCG----GGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.