miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4291 3' -58.5 NC_001716.2 + 87 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 111 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 147 0.71 0.495587
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUCa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 177 0.96 0.011043
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 227 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 259 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 285 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 323 0.98 0.008861
Target:  5'- aGGGUUAGGGUUcGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAuCCCGGCGUCGGGAu -5'
4291 3' -58.5 NC_001716.2 + 349 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 387 0.67 0.74498
Target:  5'- uGGGUUAGGGUUAGGGUUagGGUUn-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4291 3' -58.5 NC_001716.2 + 411 0.98 0.008861
Target:  5'- aGGGUUAGGGUUcGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAuCCCGGCGUCGGGAu -5'
4291 3' -58.5 NC_001716.2 + 437 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 463 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 489 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 521 0.97 0.009363
Target:  5'- aGGGUUAGGuUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCcAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 553 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 585 0.96 0.011043
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 629 0.93 0.018606
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAu -5'
4291 3' -58.5 NC_001716.2 + 667 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 693 1.04 0.003469
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCUCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.