miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4291 3' -58.5 NC_001716.2 + 143392 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 143366 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 143188 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 143162 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 259 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 349 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 227 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 143340 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 553 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 667 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 143130 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 285 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 143252 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 463 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 437 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 489 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 143570 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 143456 1.09 0.001515
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 143596 1.04 0.003469
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCUCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 693 1.04 0.003469
Target:  5'- aGGGUUAGGGUUAGGGCCGCAGCUCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCGUCGGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.