miRNA display CGI


Results 21 - 40 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4291 3' -58.5 NC_001716.2 + 143733 1.02 0.004832
Target:  5'- aGGGcUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCaAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 143672 1.02 0.004832
Target:  5'- aGGGcUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCaAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 831 1.02 0.004832
Target:  5'- aGGGcUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCaAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 769 1.02 0.004832
Target:  5'- aGGGcUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCaAUCCCAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 143622 1 0.006544
Target:  5'- aGGGUUAGGGUuagguuUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCA------AUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 719 1 0.006544
Target:  5'- aGGGUUAGGGUuagguuUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCA------AUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 143314 0.98 0.008861
Target:  5'- aGGGUUAGGGUUcGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAuCCCGGCGUCGGGAu -5'
4291 3' -58.5 NC_001716.2 + 143226 0.98 0.008861
Target:  5'- aGGGUUAGGGUUcGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAuCCCGGCGUCGGGAu -5'
4291 3' -58.5 NC_001716.2 + 323 0.98 0.008861
Target:  5'- aGGGUUAGGGUUcGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAuCCCGGCGUCGGGAu -5'
4291 3' -58.5 NC_001716.2 + 411 0.98 0.008861
Target:  5'- aGGGUUAGGGUUcGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAuCCCGGCGUCGGGAu -5'
4291 3' -58.5 NC_001716.2 + 521 0.97 0.009363
Target:  5'- aGGGUUAGGuUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCcAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 143424 0.97 0.009363
Target:  5'- aGGGUUAGGuUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCcAAUCCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 177 0.96 0.011043
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 585 0.96 0.011043
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 143080 0.96 0.011043
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 143488 0.96 0.011043
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAU- -5'
4291 3' -58.5 NC_001716.2 + 143532 0.93 0.018606
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAu -5'
4291 3' -58.5 NC_001716.2 + 629 0.93 0.018606
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAu -5'
4291 3' -58.5 NC_001716.2 + 5932 0.8 0.146149
Target:  5'- aGGGUUAGGGUUAGGGCUGgGGUuagaCUGa -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCgUCGg---GAU- -5'
4291 3' -58.5 NC_001716.2 + 6177 0.8 0.146149
Target:  5'- aGGGUUAGGGUUAGGGCUGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCgUCGGgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.