miRNA display CGI


Results 61 - 80 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4297 3' -58.5 NC_001716.2 + 145099 0.72 0.458106
Target:  5'- aGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- cCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 3383 0.72 0.458106
Target:  5'- aGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- cCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 143824 0.72 0.413482
Target:  5'- aGGGUUAGGGUUAGGGUUagAGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 143470 0.72 0.413482
Target:  5'- aGGGUUAGGGUUAGGGUUagAGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 143308 0.72 0.413482
Target:  5'- aGGGUUAGGGUUAGGGUUagGGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 143278 0.72 0.413482
Target:  5'- aGGGUUAGGGUUAGGGUUagAGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 143176 0.72 0.413482
Target:  5'- aGGGUUAGGGUUAGGGUUagAGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 143152 0.72 0.413482
Target:  5'- aGGGUUAGGGUUAGGGUUagAGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 921 0.72 0.413482
Target:  5'- aGGGUUAGGGUUAGGGUUagAGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 567 0.72 0.413482
Target:  5'- aGGGUUAGGGUUAGGGUUagAGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 376 0.72 0.413482
Target:  5'- aGGGUUAGGGUUAGGGUUagAGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 274 0.72 0.413482
Target:  5'- aGGGUUAGGGUUAGGGUUagAGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 250 0.72 0.413482
Target:  5'- aGGGUUAGGGUUAGGGUUagAGCUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 143728 0.74 0.355729
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 143374 0.74 0.355729
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 825 0.74 0.355729
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 471 0.74 0.355729
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 4145 0.75 0.310929
Target:  5'- aGGGUUAGGGUUGGGGuuGgGGUgaaaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCG----GGAU- -5'
4297 3' -58.5 NC_001716.2 + 147048 0.75 0.310929
Target:  5'- aGGGUUAGGGUUGGGGuuGgGGUgaaaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCG----GGAU- -5'
4297 3' -58.5 NC_001716.2 + 1586 0.75 0.290189
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUgaaaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCG----GGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.