miRNA display CGI


Results 21 - 40 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4297 3' -58.5 NC_001716.2 + 9348 1.02 0.004832
Target:  5'- aGGGcUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCaAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9409 1.02 0.004832
Target:  5'- aGGGcUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCaAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152250 1.02 0.004832
Target:  5'- aGGGcUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCaAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152312 1.02 0.004832
Target:  5'- aGGGcUAGGGUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCaAUCCCAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9459 1 0.006544
Target:  5'- aGGGUUAGGGUuagguuUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCA------AUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152362 1 0.006544
Target:  5'- aGGGUUAGGGUuagguuUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCA------AUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9767 0.98 0.008861
Target:  5'- aGGGUUAGGGUUcGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAuCCCGGCGUCGGGAu -5'
4297 3' -58.5 NC_001716.2 + 9855 0.98 0.008861
Target:  5'- aGGGUUAGGGUUcGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAuCCCGGCGUCGGGAu -5'
4297 3' -58.5 NC_001716.2 + 152758 0.98 0.008861
Target:  5'- aGGGUUAGGGUUcGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAuCCCGGCGUCGGGAu -5'
4297 3' -58.5 NC_001716.2 + 152670 0.98 0.008861
Target:  5'- aGGGUUAGGGUUcGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAuCCCGGCGUCGGGAu -5'
4297 3' -58.5 NC_001716.2 + 152560 0.97 0.009363
Target:  5'- aGGGUUAGGuUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCcAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9657 0.97 0.009363
Target:  5'- aGGGUUAGGuUUAGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCcAAUCCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152904 0.96 0.011043
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 152496 0.96 0.011043
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 10001 0.96 0.011043
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9593 0.96 0.011043
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUAg -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAU- -5'
4297 3' -58.5 NC_001716.2 + 9549 0.93 0.018606
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAu -5'
4297 3' -58.5 NC_001716.2 + 152452 0.93 0.018606
Target:  5'- aGGGUUAGGGUUAgggcuaggguucGGGCCGCAGCCCUn -3'
miRNA:   3'- -CCCAAUCCCAAU------------CCCGGCGUCGGGAu -5'
4297 3' -58.5 NC_001716.2 + 147149 0.8 0.146149
Target:  5'- aGGGUUAGGGUUAGGGCUGgGGUuagaCUGa -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCgUCGg---GAU- -5'
4297 3' -58.5 NC_001716.2 + 146904 0.8 0.146149
Target:  5'- aGGGUUAGGGUUAGGGCUGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGCgUCGGgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.