miRNA display CGI


Results 21 - 40 of 270 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4297 3' -58.5 NC_001716.2 + 999 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 1023 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 1047 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 1107 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 1149 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 1173 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 1203 0.68 0.655378
Target:  5'- aGGGUUAGGGUUAGGGUUagGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGGcgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 1263 0.69 0.604544
Target:  5'- aGGGUUAGGGUUAGGGU--UAGaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCGgcGUCgGGAU- -5'
4297 3' -58.5 NC_001716.2 + 1299 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 1335 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 1371 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 1406 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUagaCUu -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGg--GAu -5'
4297 3' -58.5 NC_001716.2 + 1442 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 1478 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 1514 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 1550 0.75 0.290189
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUgaaaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCG----GGAU- -5'
4297 3' -58.5 NC_001716.2 + 1586 0.75 0.290189
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUgaaaCUUAg -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCG----GGAU- -5'
4297 3' -58.5 NC_001716.2 + 1622 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 1658 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5'
4297 3' -58.5 NC_001716.2 + 1694 0.76 0.264245
Target:  5'- aGGGUUAGGGUUAGGGuuGgGGUUa-- -3'
miRNA:   3'- -CCCAAUCCCAAUCCCggCgUCGGgau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.