miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4328 5' -45.3 NC_001720.1 + 7189 0.78 0.553461
Target:  5'- cGAACAGGCUGUCGguaUCGCcauAGAGGCu -3'
miRNA:   3'- -UUUGUCCGAUAGU---AGCGuacUUUUCG- -5'
4328 5' -45.3 NC_001720.1 + 2382 0.69 0.950139
Target:  5'- -cACAGGCUAUCGcguacugcucuccccUCGUA--GGGAGCg -3'
miRNA:   3'- uuUGUCCGAUAGU---------------AGCGUacUUUUCG- -5'
4328 5' -45.3 NC_001720.1 + 6364 0.68 0.969666
Target:  5'- --cUAGGCUGuagaacUCGUCGUAggagGGGAAGUg -3'
miRNA:   3'- uuuGUCCGAU------AGUAGCGUa---CUUUUCG- -5'
4328 5' -45.3 NC_001720.1 + 4509 0.68 0.97273
Target:  5'- gGAACAGaGCauuccuuUGUUcUCGCAUaGGAGAGCg -3'
miRNA:   3'- -UUUGUC-CG-------AUAGuAGCGUA-CUUUUCG- -5'
4328 5' -45.3 NC_001720.1 + 7226 1.11 0.005597
Target:  5'- gAAACAGGCUAUCAUCGCAUGAAAAGCc -3'
miRNA:   3'- -UUUGUCCGAUAGUAGCGUACUUUUCG- -5'
4328 5' -45.3 NC_001720.1 + 32024 0.69 0.954959
Target:  5'- cAGCAGGCUAcCAuuccuaauugcggugUCGCGcuuggGGGAGGCg -3'
miRNA:   3'- uUUGUCCGAUaGU---------------AGCGUa----CUUUUCG- -5'
4328 5' -45.3 NC_001720.1 + 32242 0.68 0.969666
Target:  5'- -cACGGGUUAccuuugCAUCGUAUGggGuuaucGGCu -3'
miRNA:   3'- uuUGUCCGAUa-----GUAGCGUACuuU-----UCG- -5'
4328 5' -45.3 NC_001720.1 + 25666 0.66 0.991072
Target:  5'- ---gAGGCacaaaGUCGcuUgGCAUGAAAGGCg -3'
miRNA:   3'- uuugUCCGa----UAGU--AgCGUACUUUUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.