miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4330 5' -48.1 NC_001720.1 + 31734 0.66 0.971158
Target:  5'- gGUCCGAugGCCAcggugCCGUUc-ACGGUg -3'
miRNA:   3'- gUAGGCU--UGGUaaa--GGCGAuuUGCCG- -5'
4330 5' -48.1 NC_001720.1 + 30010 0.66 0.964098
Target:  5'- gGUCCcgcuGACCAcg-CCaccugcagcaGCUAAACGGCa -3'
miRNA:   3'- gUAGGc---UUGGUaaaGG----------CGAUUUGCCG- -5'
4330 5' -48.1 NC_001720.1 + 17354 0.66 0.960148
Target:  5'- -cUCUGAuaccuAUCAUUgcggCCGCUAu-CGGCg -3'
miRNA:   3'- guAGGCU-----UGGUAAa---GGCGAUuuGCCG- -5'
4330 5' -48.1 NC_001720.1 + 33866 0.66 0.95764
Target:  5'- ----aGAGCCAUaUCCGCUGcuucaaagcuuuauuGACGGg -3'
miRNA:   3'- guaggCUUGGUAaAGGCGAU---------------UUGCCg -5'
4330 5' -48.1 NC_001720.1 + 18964 0.67 0.935937
Target:  5'- -cUCUGAACCAga-CCGCgu-ACuGGCu -3'
miRNA:   3'- guAGGCUUGGUaaaGGCGauuUG-CCG- -5'
4330 5' -48.1 NC_001720.1 + 8360 0.67 0.935937
Target:  5'- gGUCCGAGCaCGUUgggguagcaucgUCCGCcgcgGAGCgcuuGGCg -3'
miRNA:   3'- gUAGGCUUG-GUAA------------AGGCGa---UUUG----CCG- -5'
4330 5' -48.1 NC_001720.1 + 31196 0.67 0.93017
Target:  5'- uCGUcCCGGauguaaaugcgGCCAcg-CUGCUAGugGGCg -3'
miRNA:   3'- -GUA-GGCU-----------UGGUaaaGGCGAUUugCCG- -5'
4330 5' -48.1 NC_001720.1 + 11193 0.68 0.917695
Target:  5'- -cUCCuGAcagACCcgUUCCuGCUAaggaAACGGCg -3'
miRNA:   3'- guAGG-CU---UGGuaAAGG-CGAU----UUGCCG- -5'
4330 5' -48.1 NC_001720.1 + 18023 0.68 0.917695
Target:  5'- --gCCGGcGCCGgcgCCGCggguGCGGCg -3'
miRNA:   3'- guaGGCU-UGGUaaaGGCGauu-UGCCG- -5'
4330 5' -48.1 NC_001720.1 + 42482 0.68 0.917695
Target:  5'- cCGUagGAACCGg--CCGgUAGAUGGCa -3'
miRNA:   3'- -GUAggCUUGGUaaaGGCgAUUUGCCG- -5'
4330 5' -48.1 NC_001720.1 + 4200 0.68 0.910988
Target:  5'- gGUCCGAACCGU-UCC-UUGAG-GGCu -3'
miRNA:   3'- gUAGGCUUGGUAaAGGcGAUUUgCCG- -5'
4330 5' -48.1 NC_001720.1 + 12611 0.71 0.807988
Target:  5'- gGUCCGAGCCGgcUUUCaCGC----CGGCu -3'
miRNA:   3'- gUAGGCUUGGU--AAAG-GCGauuuGCCG- -5'
4330 5' -48.1 NC_001720.1 + 30706 0.71 0.801892
Target:  5'- cCGUUCGGGuCCAagaacggaggugugaUUUCCGUggGAGCGGCu -3'
miRNA:   3'- -GUAGGCUU-GGU---------------AAAGGCGa-UUUGCCG- -5'
4330 5' -48.1 NC_001720.1 + 14849 0.71 0.797787
Target:  5'- --aCCGGGCU-UUUUCGCUAGucuGCGGCc -3'
miRNA:   3'- guaGGCUUGGuAAAGGCGAUU---UGCCG- -5'
4330 5' -48.1 NC_001720.1 + 40015 0.71 0.766058
Target:  5'- aGUCCGGuACCAUUUuccaUCGCgaaAAugGGCa -3'
miRNA:   3'- gUAGGCU-UGGUAAA----GGCGa--UUugCCG- -5'
4330 5' -48.1 NC_001720.1 + 26590 0.72 0.755151
Target:  5'- -cUCgGAGCCGgcggUUCCGaggcGGACGGCg -3'
miRNA:   3'- guAGgCUUGGUa---AAGGCga--UUUGCCG- -5'
4330 5' -48.1 NC_001720.1 + 17181 0.72 0.732924
Target:  5'- --aCCG-GCCGUUUCCGa--GGCGGCu -3'
miRNA:   3'- guaGGCuUGGUAAAGGCgauUUGCCG- -5'
4330 5' -48.1 NC_001720.1 + 10243 1.13 0.002636
Target:  5'- uCAUCCGAACCAUUUCCGCUAAACGGCu -3'
miRNA:   3'- -GUAGGCUUGGUAAAGGCGAUUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.