miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4338 5' -57.6 NC_001720.1 + 11489 0.66 0.538045
Target:  5'- aUGGCGgCGAGcaguucGGCGUcGGCGGcaGAGGCc -3'
miRNA:   3'- -ACCGCgGCUU------CUGCA-UUGCC--CUCCGa -5'
4338 5' -57.6 NC_001720.1 + 3943 0.66 0.515762
Target:  5'- cGGCuGUCGGAGAuCGcgAGCGGGAaacacgcgcauaaGGCa -3'
miRNA:   3'- aCCG-CGGCUUCU-GCa-UUGCCCU-------------CCGa -5'
4338 5' -57.6 NC_001720.1 + 26582 0.66 0.506325
Target:  5'- cGGCGguuCCG-AGGCG-GACGGcGAGGUg -3'
miRNA:   3'- aCCGC---GGCuUCUGCaUUGCC-CUCCGa -5'
4338 5' -57.6 NC_001720.1 + 19160 0.67 0.489736
Target:  5'- aUGGUGCCGGAGuugacuugcugguaaGCGg--UGGGAGGg- -3'
miRNA:   3'- -ACCGCGGCUUC---------------UGCauuGCCCUCCga -5'
4338 5' -57.6 NC_001720.1 + 9524 0.67 0.455367
Target:  5'- cGGCGCgGGAGACc-AGCuGGGGGUc -3'
miRNA:   3'- aCCGCGgCUUCUGcaUUGcCCUCCGa -5'
4338 5' -57.6 NC_001720.1 + 4578 0.68 0.426153
Target:  5'- uUGGUGUaugCGAuGaAUGUAGCGGGAGaGCUc -3'
miRNA:   3'- -ACCGCG---GCUuC-UGCAUUGCCCUC-CGA- -5'
4338 5' -57.6 NC_001720.1 + 25502 0.68 0.407307
Target:  5'- aUGGCcuuGCCGAuGGCGgu-CGGGuuGGGCa -3'
miRNA:   3'- -ACCG---CGGCUuCUGCauuGCCC--UCCGa -5'
4338 5' -57.6 NC_001720.1 + 28505 0.68 0.388992
Target:  5'- uUGGUGuuGAGGACG-AGCccgucuccgggGGuGAGGCUg -3'
miRNA:   3'- -ACCGCggCUUCUGCaUUG-----------CC-CUCCGA- -5'
4338 5' -57.6 NC_001720.1 + 28367 0.68 0.388992
Target:  5'- aUGGUcccGCUGgcGGCGUAaaGCGGGucauuGGGCUg -3'
miRNA:   3'- -ACCG---CGGCuuCUGCAU--UGCCC-----UCCGA- -5'
4338 5' -57.6 NC_001720.1 + 18015 0.73 0.202283
Target:  5'- cGGCGCCGcGGGUGcGGCGGGcGGCUc -3'
miRNA:   3'- aCCGCGGCuUCUGCaUUGCCCuCCGA- -5'
4338 5' -57.6 NC_001720.1 + 18103 1.07 0.000635
Target:  5'- cUGGCGCCGAAGACGUAACGGGAGGCUu -3'
miRNA:   3'- -ACCGCGGCUUCUGCAUUGCCCUCCGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.