miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4342 3' -55 NC_001720.1 + 10570 0.7 0.458562
Target:  5'- cCCAcaGGGUUUCGAauaUGGUGGCGGg- -3'
miRNA:   3'- aGGUa-CCCGAAGCUg--GCCAUUGCCag -5'
4342 3' -55 NC_001720.1 + 11136 0.74 0.249446
Target:  5'- cUCUA-GGGCgcaGGCCGGU-GCGGUCg -3'
miRNA:   3'- -AGGUaCCCGaagCUGGCCAuUGCCAG- -5'
4342 3' -55 NC_001720.1 + 12397 0.66 0.675944
Target:  5'- gUCgCGUgcGGGCUggCGGCCGGggcCGGUg -3'
miRNA:   3'- -AG-GUA--CCCGAa-GCUGGCCauuGCCAg -5'
4342 3' -55 NC_001720.1 + 21581 1.11 0.000599
Target:  5'- aUCCAUGGGCUUCGACCGGUAACGGUCg -3'
miRNA:   3'- -AGGUACCCGAAGCUGGCCAUUGCCAG- -5'
4342 3' -55 NC_001720.1 + 31285 0.66 0.653674
Target:  5'- aCCAUGGGUacgCGucccaCGGgcGCGGUa -3'
miRNA:   3'- aGGUACCCGaa-GCug---GCCauUGCCAg -5'
4342 3' -55 NC_001720.1 + 37939 0.67 0.620141
Target:  5'- gUCGggGGGCUUUGA-UGGUggUGGUCc -3'
miRNA:   3'- aGGUa-CCCGAAGCUgGCCAuuGCCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.