miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4344 3' -53.1 NC_001720.1 + 22525 0.89 0.030397
Target:  5'- aACGCGGUGUGCUACAAGGAUcAgGAGc -3'
miRNA:   3'- -UGCGCCACACGAUGUUCCUAcUgCUC- -5'
4344 3' -53.1 NC_001720.1 + 32004 0.74 0.299445
Target:  5'- uUGCGGUGUcgcGCUugGGGGA-GGCGGGu -3'
miRNA:   3'- uGCGCCACA---CGAugUUCCUaCUGCUC- -5'
4344 3' -53.1 NC_001720.1 + 28020 0.72 0.403055
Target:  5'- cGCGCGG-GUGacgaGCGAGGgcGGCGAGc -3'
miRNA:   3'- -UGCGCCaCACga--UGUUCCuaCUGCUC- -5'
4344 3' -53.1 NC_001720.1 + 35436 0.67 0.684491
Target:  5'- gAUGCGGauaGUGUUAUcucuAGGGAUGACGcGGa -3'
miRNA:   3'- -UGCGCCa--CACGAUG----UUCCUACUGC-UC- -5'
4344 3' -53.1 NC_001720.1 + 17276 0.67 0.684491
Target:  5'- uCGCGGggGUGCcggACGAGGcgGcugcGCGAGc -3'
miRNA:   3'- uGCGCCa-CACGa--UGUUCCuaC----UGCUC- -5'
4344 3' -53.1 NC_001720.1 + 29446 0.66 0.761314
Target:  5'- -gGCGG-GUGC-GCAAGGcuUGACGGu -3'
miRNA:   3'- ugCGCCaCACGaUGUUCCu-ACUGCUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.