Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4344 | 5' | -59.6 | NC_001720.1 | + | 10271 | 0.66 | 0.420696 |
Target: 5'- aCCUCGUCgCgCCGC-CGCuucgaugucuucGCGGCGGUg -3' miRNA: 3'- gGGAGUAG-G-GGUGcGCG------------UGCCGUCAa -5' |
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4344 | 5' | -59.6 | NC_001720.1 | + | 11116 | 0.66 | 0.411367 |
Target: 5'- gCCUUCGUagaccgccugCCCCGCGUcaCGCGGCGGc- -3' miRNA: 3'- -GGGAGUA----------GGGGUGCGc-GUGCCGUCaa -5' |
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4344 | 5' | -59.6 | NC_001720.1 | + | 27956 | 0.66 | 0.393099 |
Target: 5'- gCCCUCGcUCgUCAccCGCGCGCGGUAc-- -3' miRNA: 3'- -GGGAGU-AGgGGU--GCGCGUGCCGUcaa -5' |
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4344 | 5' | -59.6 | NC_001720.1 | + | 12319 | 0.68 | 0.325495 |
Target: 5'- gCCU-AUCCCgGCGCGggcgcgacaccCACGGCAGg- -3' miRNA: 3'- gGGAgUAGGGgUGCGC-----------GUGCCGUCaa -5' |
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4344 | 5' | -59.6 | NC_001720.1 | + | 10799 | 0.69 | 0.273749 |
Target: 5'- uCCCaugaGUCCCgCGuCGCGCGCGGuCAGg- -3' miRNA: 3'- -GGGag--UAGGG-GU-GCGCGUGCC-GUCaa -5' |
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4344 | 5' | -59.6 | NC_001720.1 | + | 9588 | 0.69 | 0.253674 |
Target: 5'- cCCCagcUgGUCuCCCGCGCcgaacgcuuaGCACGGCAGg- -3' miRNA: 3'- -GGG---AgUAG-GGGUGCG----------CGUGCCGUCaa -5' |
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4344 | 5' | -59.6 | NC_001720.1 | + | 22488 | 1.07 | 0.000377 |
Target: 5'- uCCCUCAUCCCCACGCGCACGGCAGUUg -3' miRNA: 3'- -GGGAGUAGGGGUGCGCGUGCCGUCAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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