Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4345 | 5' | -54.8 | NC_001720.1 | + | 15214 | 0.71 | 0.417282 |
Target: 5'- -aUCAUCgCCgGaUAAGGCGAGggACCa -3' miRNA: 3'- ggGGUAGgGGgC-AUUCCGCUCaaUGG- -5' |
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4345 | 5' | -54.8 | NC_001720.1 | + | 15316 | 0.66 | 0.714537 |
Target: 5'- gCCCGUCUCCgG--GGGUGAGgcugacGCCc -3' miRNA: 3'- gGGGUAGGGGgCauUCCGCUCaa----UGG- -5' |
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4345 | 5' | -54.8 | NC_001720.1 | + | 21318 | 0.67 | 0.637829 |
Target: 5'- cCCUCAUCCCCaCGcgcacGGC-AGUUGCg -3' miRNA: 3'- -GGGGUAGGGG-GCauu--CCGcUCAAUGg -5' |
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4345 | 5' | -54.8 | NC_001720.1 | + | 23091 | 1.13 | 0.000568 |
Target: 5'- uCCCCAUCCCCCGUAAGGCGAGUUACCc -3' miRNA: 3'- -GGGGUAGGGGGCAUUCCGCUCAAUGG- -5' |
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4345 | 5' | -54.8 | NC_001720.1 | + | 28065 | 0.7 | 0.470217 |
Target: 5'- aCCCCugaaCCCCGguuuuguauucuggcUGAGGCGAcggUACCg -3' miRNA: 3'- -GGGGuag-GGGGC---------------AUUCCGCUca-AUGG- -5' |
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4345 | 5' | -54.8 | NC_001720.1 | + | 28489 | 0.68 | 0.582652 |
Target: 5'- uUCCGUCCaCCCGUA-GGCGGcaucACCc -3' miRNA: 3'- gGGGUAGG-GGGCAUuCCGCUcaa-UGG- -5' |
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4345 | 5' | -54.8 | NC_001720.1 | + | 35636 | 0.66 | 0.692861 |
Target: 5'- cUCCCAUCUgcuCCCG-GAGGgGAGgcagACUg -3' miRNA: 3'- -GGGGUAGG---GGGCaUUCCgCUCaa--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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