miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4367 3' -55.8 NC_001720.1 + 23050 0.66 0.676739
Target:  5'- uCC-UCG-CGGCGGcuGACCuucuugcgagucGCGCCUCGg -3'
miRNA:   3'- -GGuAGCaGUCGCU--CUGG------------UGCGGAGCg -5'
4367 3' -55.8 NC_001720.1 + 39002 0.66 0.670185
Target:  5'- aCCcgCGacggucucguggacaUCAGUGAGAaaaaAUGCCUCGUc -3'
miRNA:   3'- -GGuaGC---------------AGUCGCUCUgg--UGCGGAGCG- -5'
4367 3' -55.8 NC_001720.1 + 26958 0.67 0.599928
Target:  5'- gCCGUCucCGGCGAGACCccagacccaauaGCuGCCUCa- -3'
miRNA:   3'- -GGUAGcaGUCGCUCUGG------------UG-CGGAGcg -5'
4367 3' -55.8 NC_001720.1 + 11507 0.67 0.599928
Target:  5'- gCGUCGgCGGCaGAGGCCguucgcaugaggACGCCUucuUGCa -3'
miRNA:   3'- gGUAGCaGUCG-CUCUGG------------UGCGGA---GCG- -5'
4367 3' -55.8 NC_001720.1 + 37126 0.68 0.556423
Target:  5'- cCCaAUCGUCGGgcaCGaAGACC-C-CCUCGCa -3'
miRNA:   3'- -GG-UAGCAGUC---GC-UCUGGuGcGGAGCG- -5'
4367 3' -55.8 NC_001720.1 + 24454 0.68 0.535
Target:  5'- uCCGUCGaCAGCGugcaaAGGCagcucgaACGCUUCGUc -3'
miRNA:   3'- -GGUAGCaGUCGC-----UCUGg------UGCGGAGCG- -5'
4367 3' -55.8 NC_001720.1 + 545 0.68 0.524397
Target:  5'- --uUCGUCuccgGAGACCG-GCCUCGCc -3'
miRNA:   3'- gguAGCAGucg-CUCUGGUgCGGAGCG- -5'
4367 3' -55.8 NC_001720.1 + 28306 0.68 0.513875
Target:  5'- aCGcCGcCAGCGGGACCAUcaaCCUaCGCa -3'
miRNA:   3'- gGUaGCaGUCGCUCUGGUGc--GGA-GCG- -5'
4367 3' -55.8 NC_001720.1 + 25768 0.69 0.472715
Target:  5'- gCA-CGagCGGCGGGGCCGgCGCCggCGCc -3'
miRNA:   3'- gGUaGCa-GUCGCUCUGGU-GCGGa-GCG- -5'
4367 3' -55.8 NC_001720.1 + 29951 0.7 0.423728
Target:  5'- gCGUgGUCAGCGGGACCAUucaagugacaaGCUaUGCc -3'
miRNA:   3'- gGUAgCAGUCGCUCUGGUG-----------CGGaGCG- -5'
4367 3' -55.8 NC_001720.1 + 21856 0.7 0.423728
Target:  5'- cCCAUCGcCAGUGAcGACC-CG-UUCGCu -3'
miRNA:   3'- -GGUAGCaGUCGCU-CUGGuGCgGAGCG- -5'
4367 3' -55.8 NC_001720.1 + 30218 0.71 0.352063
Target:  5'- cCCAUCuGaUCGGgGuAGAUgGCGCCUUGCu -3'
miRNA:   3'- -GGUAG-C-AGUCgC-UCUGgUGCGGAGCG- -5'
4367 3' -55.8 NC_001720.1 + 22991 0.72 0.34373
Target:  5'- gCCA--GUUAGCG-GGCCAgGCUUCGCc -3'
miRNA:   3'- -GGUagCAGUCGCuCUGGUgCGGAGCG- -5'
4367 3' -55.8 NC_001720.1 + 20388 0.75 0.218033
Target:  5'- cCCAUCGgcCAGCGAGGCgugGUCUCGCu -3'
miRNA:   3'- -GGUAGCa-GUCGCUCUGgugCGGAGCG- -5'
4367 3' -55.8 NC_001720.1 + 23337 1.13 0.000398
Target:  5'- cCCAUCGUCAGCGAGACCACGCCUCGCu -3'
miRNA:   3'- -GGUAGCAGUCGCUCUGGUGCGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.